README.md

In abc-igmm/transcripTools: Collection of functions for analysing gene expression data

transcripTools

About & Installation

A collection of functions that I've found myself using time and time again for transcriptomic analysis.

transcripTools can be installed directly from github via devtools::install_github("abc-igmm/transcripTools"). The devtools package itself can be installed using install.packages("devtools") within an R terminal.

Everything is documented and there is also a basic vignette that you can view here

If you need help, even if it's simply "I have no idea where to even start" then just email me at [e-mail]

Contributing

If you'd like to add your own code this guide should help those of you using Rstudio. Be sure to skip the steps for "Create New project AND git" and go straight to "Clone an existing GitHub project to new RStudio project".

Alternatively, for those working directly from the commandline, simply git clone https://github.com/abc-igmm/transcripTools and then git add, git commit and git push as normal or watch this video here.

Following the advice in Hadley Wickham's R Packages book should let you know how to write and document your own additions.

Direction

• [x] Actually write decent examples so others can use the functions with confidence
• [ ] heatmapArrange includes hierarchical clustering code that could exist as it's own standalone function
• [ ] Write tests, code coverage is currently at 0%...

abc-igmm/transcripTools documentation built on May 20, 2019, 3:05 p.m.