filter_bmdk: Runs the BMDK features data through a series of filtering...
In abcsFrederick/BMDK: Biomarker Discovery Kit
Description
Usage
Arguments
Value
Description
Utilizes the Wilcoxon Rank Sum test, the t test, and the Decision Tree Gini
Index to identify the significance of each feature.
Usage
1
filter_bmdk(dat)
Arguments
dat
a list containing 3 elements: case, a list of case/control statuses;
feat, a matrix of normalized feature data; maxfeat, a list of max features
from each column in feat
Value
dat a list containing 4 elements: case, a list of case/control statuses;
feat, a matrix of normalized feature data; maxfeat, a list of max features
from each column in feat; testresults, a list of statistical test results
abcsFrederick/BMDK documentation built on Aug. 9, 2021, 2:19 p.m.
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Description Usage Arguments Value
Description
Utilizes the Wilcoxon Rank Sum test, the t test, and the Decision Tree Gini Index to identify the significance of each feature.
Usage
1 | filter_bmdk(dat)
|
Arguments
dat |
a list containing 3 elements: case, a list of case/control statuses; feat, a matrix of normalized feature data; maxfeat, a list of max features from each column in feat |
Value
dat a list containing 4 elements: case, a list of case/control statuses; feat, a matrix of normalized feature data; maxfeat, a list of max features from each column in feat; testresults, a list of statistical test results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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