pqpq_orig: Matlab's PQPQ function
In abell8/PQPQ: PQPQ For R Users
Description
Usage
Arguments
Value
See Also
Description
This function implements the Matlab version of PQPQ, removing all peptides with missing values and
performing PQPQ on the remaining data.
Usage
1
pqpq_orig(pepDataFixed, confList)
Arguments
pepDataFixed
An object of type 'pepObject' (from pmartRqc), which has been preferably
normalized and filtered. The matrix 'e_data' has n rows.
confList
A list of n confidence values from 0 to 100, corresponding to the peptides in 'e_data'.
Value
A data frame with 3 columns:
- Protein
Which protein this peptide is associated with
- Peptide
The row name of the valid peptide
- ID
Which cluster the peptide is considered clustered to
See Also
abell8/PQPQ documentation built on May 20, 2019, 8:47 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also
Description
This function implements the Matlab version of PQPQ, removing all peptides with missing values and performing PQPQ on the remaining data.
Usage
1 | pqpq_orig(pepDataFixed, confList)
|
Arguments
pepDataFixed |
An object of type 'pepObject' (from pmartRqc), which has been preferably normalized and filtered. The matrix 'e_data' has n rows. |
confList |
A list of n confidence values from 0 to 100, corresponding to the peptides in 'e_data'. |
Value
A data frame with 3 columns:
- Protein
Which protein this peptide is associated with
- Peptide
The row name of the valid peptide
- ID
Which cluster the peptide is considered clustered to
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.