Description Usage Arguments Value See Also
This function implements the Matlab version of PQPQ, removing all peptides with missing values and performing PQPQ on the remaining data.
1 | pqpq_orig(pepDataFixed, confList)
|
pepDataFixed |
An object of type 'pepObject' (from pmartRqc), which has been preferably normalized and filtered. The matrix 'e_data' has n rows. |
confList |
A list of n confidence values from 0 to 100, corresponding to the peptides in 'e_data'. |
A data frame with 3 columns:
Which protein this peptide is associated with
The row name of the valid peptide
Which cluster the peptide is considered clustered to
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