get_clade: Extract the clade of a desired rank in a lineage
In abichat/yatah: Yet Another TAxonomy Handler
get_clade R Documentation
Extract the clade of a desired rank in a lineage
Description
Extract the clade of a desired rank in a lineage
Usage
get_clade(lineage, rank = yatah::all_ranks, same = TRUE)
Arguments
lineage
string. Vector of lineages.
rank
The desired rank of the clade.
same
logical. Does the lineage have the same depth? Default to TRUE.
Value
A string.
Examples
lineage1 <- "k__Bacteria|p__Verrucomicrobia|c__Verrucomicrobiae"
lineage2 <- "k__Bacteria|p__Firmicutes|c__Clostridia"
get_clade(c(lineage1, lineage2), "phylum")
abichat/yatah documentation built on April 14, 2024, 7:25 a.m.
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| get_clade | R Documentation |
Extract the clade of a desired rank in a lineage
Description
Extract the clade of a desired rank in a lineage
Usage
get_clade(lineage, rank = yatah::all_ranks, same = TRUE)
Arguments
lineage |
string. Vector of lineages. |
rank |
The desired rank of the clade. |
same |
logical. Does the lineage have the same depth? Default to |
Value
A string.
Examples
lineage1 <- "k__Bacteria|p__Verrucomicrobia|c__Verrucomicrobiae"
lineage2 <- "k__Bacteria|p__Firmicutes|c__Clostridia"
get_clade(c(lineage1, lineage2), "phylum")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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