Man pages for abnormally-distributed/rsfcNet
Analyze resting state functional connectivity networks
| bad_ts | Read Bad Time Points from Confound Matrix |
| binarize | Binarize a correlation matrix. |
| btwn_centr | Calculate betweenness centrality for a single graph. |
| btwn_centr_mult | Calculate betweenness centrality for a list of graphs. |
| closeness_centr | Calculate closeness centrality for a single graph. |
| closeness_centr_mult | Calculate closeness centrality for a list of graphs. |
| clustcoef_signed | Calculate signed clustering coeffecient for a single graph |
| clustcoef_signed_mult | Calculate signed clustering coeffecient for a list of graphs. |
| consensus.utility.func | Utility function for louvain signed algorithm |
| current_centr | Find current-flow closeness centrality for a single graph |
| current_centr_mult | Find current-flow closeness centrality for a list of graphs |
| degree_centr | Calculate degree centrality for a single graph. |
| degree_mult | Calculate degree centrality for multiple graphs. |
| delta_energy | Calculate the nodewise-deletion change in graph energy for a... |
| delta_energy_mult | Calculate the nodewise-deletion change in graph energy for a... |
| dist_fit | Fit a vector of variables to the best distribution |
| eigen_centr | Calculate eigenvector centrality for a single graph. |
| eigen_centr_mult | Calculate eigenvector centrality for multiple graphs. |
| fiedler_value | Calculate the fiedler value for a graph |
| fiedler_value_mult | Calculate the fiedler value for a list of graphs. |
| get_average_graph | Average together a list of connectivity matrices |
| get_cor_matrices | Obtain correlation matrices for each subject. |
| get_file_list | Imports List of Time Series or Confound Files |
| get_modules | Get the modularity and module partitions of a weighted... |
| global_clust | Calculate the global average clustering coefficient for a... |
| global_clust_mult | Calculate the global average clustering coefficient for a... |
| global_trans | Calculate the global transitivity of a list of graphs |
| graph_energy | Calculate the graph energy for a single graph |
| graph_energy_mult | Calculate the graph energy for a list of graphs |
| heatmap | Visualize a connectivity matrix |
| import_from_list | Imports Time Series or Confound Files from the list created... |
| iterative_louvain_signed | Reiterative louvain community detection for signed networks |
| laplace_centr | Calculate Laplacian centrality for a single graph. |
| laplace_centr_mult | Calculate Laplacian centrality for a list of graphs. |
| leverage_centr | Calculate leverage centrality for a single graph.. |
| leverage_centr_mult | Calculate leverage centrality for a list of graphs. |
| local_trans | Calculate the local transitivity of a list of graphs |
| mats_as_graphs | Convert list of connectivity matrices to igraph objects |
| modularity_consensus | Get the consensus community membership labels |
| module_connectivity | Calculate several module/community based network statistics |
| neighbor_centr | Calculate the average connectivity of each node's neighbors |
| neighbor_centr_mult | Calculate neighbor centrality for multiple graphs |
| save_files | Save a list of files |
| scrub_matrix | Used in scrub_time_series function. |
| scrub_time_series | "Scrubs" Bad Time Points from Time Series Matrix |
| soft_thresh | Soft Thresholding Function for Signed Correlation Networks |
| strength_distribution | Get the degree or strength distribution for a graph |
| strength_multiple | Calculate signed strength statistics on a multiple graphs. |
| strength_signed | Calculate signed strength statistics on a single graph. |
| threshold_matrix | Threshold a correlation matrix |
| transform_matrix | Transform a correlation matrix into cohen's d or z-scores and... |
| vitality | Find the closeness vitality for a single graph. |
| vitality_mult | Find the closeness vitality for a multiple graphs. |
| write_brainNet | Create Node and Edge Files for Brain Net Viewer |
| write_gephi | Create Gephi File from graph object |
