Analyze resting state functional connectivity networks

bad_ts | Read Bad Time Points from Confound Matrix |

binarize | Binarize a correlation matrix. |

btwn_centr | Calculate betweenness centrality for a single graph. |

btwn_centr_mult | Calculate betweenness centrality for a list of graphs. |

closeness_centr | Calculate closeness centrality for a single graph. |

closeness_centr_mult | Calculate closeness centrality for a list of graphs. |

clustcoef_signed | Calculate signed clustering coeffecient for a single graph |

clustcoef_signed_mult | Calculate signed clustering coeffecient for a list of graphs. |

consensus.utility.func | Utility function for louvain signed algorithm |

current_centr | Find current-flow closeness centrality for a single graph |

current_centr_mult | Find current-flow closeness centrality for a list of graphs |

degree_centr | Calculate degree centrality for a single graph. |

degree_mult | Calculate degree centrality for multiple graphs. |

delta_energy | Calculate the nodewise-deletion change in graph energy for a... |

delta_energy_mult | Calculate the nodewise-deletion change in graph energy for a... |

dist_fit | Fit a vector of variables to the best distribution |

eigen_centr | Calculate eigenvector centrality for a single graph. |

eigen_centr_mult | Calculate eigenvector centrality for multiple graphs. |

fiedler_value | Calculate the fiedler value for a graph |

fiedler_value_mult | Calculate the fiedler value for a list of graphs. |

get_average_graph | Average together a list of connectivity matrices |

get_cor_matrices | Obtain correlation matrices for each subject. |

get_file_list | Imports List of Time Series or Confound Files |

get_modules | Get the modularity and module partitions of a weighted... |

global_clust | Calculate the global average clustering coefficient for a... |

global_clust_mult | Calculate the global average clustering coefficient for a... |

global_trans | Calculate the global transitivity of a list of graphs |

graph_energy | Calculate the graph energy for a single graph |

graph_energy_mult | Calculate the graph energy for a list of graphs |

heatmap | Visualize a connectivity matrix |

import_from_list | Imports Time Series or Confound Files from the list created... |

iterative_louvain_signed | Reiterative louvain community detection for signed networks |

laplace_centr | Calculate Laplacian centrality for a single graph. |

laplace_centr_mult | Calculate Laplacian centrality for a list of graphs. |

leverage_centr | Calculate leverage centrality for a single graph.. |

leverage_centr_mult | Calculate leverage centrality for a list of graphs. |

local_trans | Calculate the local transitivity of a list of graphs |

mats_as_graphs | Convert list of connectivity matrices to igraph objects |

modularity_consensus | Get the consensus community membership labels |

module_connectivity | Calculate several module/community based network statistics |

neighbor_centr | Calculate the average connectivity of each node's neighbors |

neighbor_centr_mult | Calculate neighbor centrality for multiple graphs |

save_files | Save a list of files |

scrub_matrix | Used in scrub_time_series function. |

scrub_time_series | "Scrubs" Bad Time Points from Time Series Matrix |

strength_distribution | Get the degree or strength distribution for a graph |

strength_multiple | Calculate signed strength statistics on a multiple graphs. |

strength_signed | Calculate signed strength statistics on a single graph. |

threshold_matrix | Threshold a correlation matrix |

transform_matrix | Transform a correlation matrix into cohen's d or z-scores and... |

vitality | Find the closeness vitality for a single graph. |

vitality_mult | Find the closeness vitality for a multiple graphs. |

write_brainNet | Create Node and Edge Files for Brain Net Viewer |

write_gephi | Create Gephi File from graph object |

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