top: Get the N most abundant clonotypes

In abrown435/immunarch-test: Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

Description

Get the N most abundant clonotypes

Usage

top(.data, .n = 10)

Arguments

.data

The data to be processed. Can be data.frame, data.table, or a list of these objects. Every object must have columns in the immunarch compatible format. immunarch_data_format Competent users may provide advanced data representations: DBI database connections, Apache Spark DataFrame from copy_to or a list of these objects. They are supported with the same limitations as basic objects. Note: each connection must represent a separate repertoire.

.n

Numeric. Number of the most abundant clonotypes to return.

Value

Data frame with the .n most abundant clonotypes only.

Examples

data(immdata)
top(immdata$data)
top(immdata$data[[1]])

abrown435/immunarch-test documentation built on July 29, 2020, 12:04 a.m.