NEWS.md

In acidgenomics/Chromium: 10X Genomics Chromium

Release notes

Chromium 0.3.0 (2023-10-06)

Major changes:

• Improved single sample detection, used in unit tests.
• Bumping version due to potential breaking changes in Acid Genomics dependency packages.
• Now enforcing strict camel case for all function names.
• Removed stringi dependency, in favor of AcidBase variants.

Chromium 0.2.1 (2023-02-14)

Minor changes:

• Updated package dependencies to Bioconductor 3.16.
• Updated internal calls to pipette import, which now uses con instead of file as the primary input argument.

Chromium 0.2.0 (2022-06-07)

Major changes:

• Now requiring R 4.2 / Bioconductor 3.15.
• Split out basejump imports in NAMESPACE into component packages.
• Updated lintr and testthat checks.

Minor changes:

• Resaved pbmc_v2 and pbmc_v3 example objects. Improved handling of UTF-8 strings in sample metrics, which now generates a package check note for R 4.2.

Chromium 0.1.9 (2021-03-12)

Minor changes:

• Updated basejump dependencies and removed unnecessary stringr import.

Chromium 0.1.8 (2021-03-04)

Minor changes:

• Reworked and simplified internal NAMESPACE using basejump v0.14.

Chromium 0.1.7 (2020-10-12)

Minor changes:

• Updated minimum Acid Genomics dependency versions.

Chromium 0.1.6 (2020-07-23)

Minor changes:

• Maintenance release, bumping the minimum R version to 4.0.

Chromium 0.1.5 (2020-03-11)

Minor changes:

• NAMESPACE fix removing isSpike, which is now defunct in Bioconductor 3.11 SingleCellExperiment update.

Chromium 0.1.4 (2020-02-24)

Minor changes:

• CellRanger: Removed now defunct spikeNames argument. Refer to makeSummarizedExperiment, makeSingleCellExperiment documentation and release notes in basejump package for details.

Chromium 0.1.3 (2020-01-27)

Minor changes:

• Updated basejump dependencies.
• Now using cli package for messages.

Chromium 0.1.2 (2019-10-30)

Minor changes:

• Compatibility fixes for Bioconductor 3.10.

Chromium 0.1.1 (2019-08-28)

Minor changes:

• NAMESPACE and basejump dependency updates.
• Now using leftJoin instead of left_join for DataFrame.

Chromium 0.1.0 (2019-08-23)

Initial release.

acidgenomics/Chromium documentation built on Oct. 11, 2023, 1:30 a.m.