NEWS.md

In acidgenomics/PANTHER: PANTHER

Release notes

PANTHER 0.5.0 (2023-10-06)

Major changes:

• Added support for new 18.0 release.
• Updated Acid Genomics dependencies. Note that imports now consistently use strict camel case for function names.

Minor changes:

• Now using AcidBase string splitting functions internally instead of stringi.
• No longer requiring readr engine for primary generator.
• Need to decode MGI annotations for mouse.

PANTHER 0.4.0 (2023-08-12)

Major changes:

• Now requiring R 4.3 / Bioconductor 3.17.

Minor changes:

• Reworked main PANTHER generator to work with updates in pipette and AcidGenomes packages.

PANTHER 0.3.0 (2022-05-10)

Major changes:

• Now requiring R 4.2 / Bioconductor 3.15.
• Added support for PANTHER 17.0 release.

Minor changes:

• Using stringi internally instead of stringr.

PANTHER 0.2.2 (2021-09-08)

Minor changes:

• Updated basejump dependencies.
• Removed unnecessary basejumpTestsURL from NAMESPACE.
• Now using abort (from AcidCLI via basejump) for error messages.

PANTHER 0.2.1 (2021-03-12)

Minor changes:

• Updated basejump dependencies, and removed now unnecessary stringr import.

PANTHER 0.2.0 (2021-03-02)

Major changes:

• Simplified internal code, using improved methods defined in basejump v0.14 release series. In particular, now taking advantage of CharacterList methods for operations on list columns, which are way faster than attempting to process via BiocParallel.
• Updated to support PANTHER 16.0, which has introduced some breaking changes.

PANTHER 0.1.4 (2020-10-28)

Minor changes:

• Improved message consistency, using cli package.
• Sped up package checks for Travis CI inside Docker image.

PANTHER 0.1.3 (2020-10-12)

Minor changes:

• Updated basejump dependencies.

PANTHER 0.1.2 (2020-07-23)

Minor changes:

• Maintenance release, upgrading R dependency to 4.0.

PANTHER 0.1.1 (2020-01-08)

Minor changes:

• Documentation updates, using roxygen2 7.0 release.
• Bug fix in transformer mutateAll required, for improved nested list column handling following Bioconductor update. Added an internal as_tibble() call prior to handoff to DataFrame, which improves return consistency for nested list columns.

PANTHER 0.1.0 (2019-09-25)

Initial release. Code was split out from basejump package.

acidgenomics/PANTHER documentation built on Oct. 19, 2023, 5 a.m.