R/package.R

In acidgenomics/PANTHER: PANTHER

#' PANTHER
#'
#' PANTHER database annotations.
#'
#' @aliases NULL
#' @keywords internal
"_PACKAGE"



## S4 classes ==================================================================

#' @importClassesFrom S4Vectors DFrame
NULL



## S4 generics and methods =====================================================

#' @importFrom AcidGenerics camelCase leftJoin mutateAt showHeader
#' @importFrom BiocGenerics do.call lapply rbind sort unique unlist unsplit
#' @importFrom IRanges gsub
#' @importFrom S4Vectors complete.cases decode head metadata metadata<- split
#' tail
#' @importFrom methods show
#' @importFrom pipette import
#'
#' @importMethodsFrom AcidBase showHeader
#' @importMethodsFrom AcidPlyr leftJoin mutateAt
#' @importMethodsFrom pipette decode import
#' @importMethodsFrom syntactic camelCase
NULL



## Standard functions ==========================================================

#' @importFrom AcidBase pasteUrl showSlotInfo strExtract strMatch
#' @importFrom AcidCLI abort alert alertWarning
#' @importFrom AcidGenomes Hgnc Mgi
#' @importFrom goalie assert hasInternet hasLength hasNoDuplicates hasRows
#' isOrganism isString isSubset validate
#' @importFrom IRanges CharacterList SplitDataFrameList
#' @importFrom S4Vectors DataFrame SimpleList
#' @importFrom methods as is new setClass setValidity
#' @importFrom pipette cacheUrl
#' @importFrom utils packageName packageVersion
NULL