plotRrnaMappingRate: Plot ribosomal RNA (rRNA) mapping rate
In acidgenomics/acidgenerics: Acid Genomics Generics
plotRrnaMappingRate R Documentation
Plot ribosomal RNA (rRNA) mapping rate
Description
Clean, high-quality samples should have an rRNA mapping rate below 10%.
Higher rates are likely indicative of the polyA enrichment or ribo depletion
protocol not having removed all ribosomal RNA (rRNA) transcripts. This will
reduce the number of biologically meaningful reads in the experiment and is
best avoided.
Usage
plotRrnaMappingRate(object, ...)
Arguments
object
Object.
...
Additional arguments.
Value
ggplot.
Examples
showMethods("plotRrnaMappingRate")
acidgenomics/acidgenerics documentation built on April 7, 2024, 12:50 a.m.
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| plotRrnaMappingRate | R Documentation |
Plot ribosomal RNA (rRNA) mapping rate
Description
Clean, high-quality samples should have an rRNA mapping rate below 10%. Higher rates are likely indicative of the polyA enrichment or ribo depletion protocol not having removed all ribosomal RNA (rRNA) transcripts. This will reduce the number of biologically meaningful reads in the experiment and is best avoided.
Usage
plotRrnaMappingRate(object, ...)
Arguments
object |
Object. |
... |
Additional arguments. |
Value
ggplot.
Examples
showMethods("plotRrnaMappingRate")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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