API for acidgenomics/freerange
Generate and Manipulate Genomic Ranges
| Global functions | |
|---|---|
| .addTxVersion | Source code |
| .annotationHub | Source code |
| .applyBroadClass | Source code |
| .broadClass | Source code |
| .checkGRangesAgainstTxDb | Source code |
| .detectGFFSource | Source code |
| .detectGFFType | Source code |
| .detectGRangesIDs | Source code |
| .detectPARDupes | Source code |
| .forceDetach | Source code |
| .getAnnotationHubID | Source code |
| .getEnsDbFromAnnotationHub | Source code |
| .getEnsDbFromPackage | Source code |
| .makeGRanges | Source code |
| .makeGenesFromEnsemblGFF3 | Source code |
| .makeGenesFromEnsemblGTF | Source code |
| .makeGenesFromFlyBaseGTF | Source code |
| .makeGenesFromGencodeGFF3 | Source code |
| .makeGenesFromGencodeGTF | Source code |
| .makeGenesFromRefSeqGFF3 | Source code |
| .makeGenesFromRefSeqGTF | Source code |
| .makeGenesFromWormBaseGTF | Source code |
| .makeTranscriptsFromEnsemblGFF3 | Source code |
| .makeTranscriptsFromEnsemblGTF | Source code |
| .makeTranscriptsFromFlyBaseGTF | Source code |
| .makeTranscriptsFromGencodeGFF3 | Source code |
| .makeTranscriptsFromGencodeGTF | Source code |
| .makeTranscriptsFromRefSeqGFF3 | Source code |
| .makeTranscriptsFromRefSeqGTF | Source code |
| .makeTranscriptsFromWormBaseGTF | Source code |
| .makeTxDbFromGFF | Source code |
| .mergeGenesIntoTranscripts | Source code |
| .minimizeGFF3 | Source code |
| .minimizeGRanges | Source code |
| .slotGFFDetectInfo | Source code |
| .slotGenomeMetadata | Source code |
| .slotOrganism | Source code |
| .standardizeFlyBaseToEnsembl | Source code |
| .standardizeGRanges | Source code |
| .standardizeGencodeToEnsembl | Source code |
| .standardizeRefSeqToEnsembl | Source code |
| annotable | Man page Source code |
| convertUCSCBuildToEnsembl | Man page Source code |
| detectOrganism | Man page Source code |
| emptyRanges | Man page Source code |
| freerangeTestsURL | Man page |
| makeGRangesFromEnsDb | Man page Source code |
| makeGRangesFromEnsembl | Man page Source code |
| makeGRangesFromGFF | Man page Source code |
| makeGRangesFromGTF | Man page |
| organismMappings | Man page |
| pasteURL | Man page |
| reexports | Man page |
