makeGRangesFromEnsDb: Make GRanges from EnsDb object
In acidgenomics/freerange: Generate and Manipulate Genomic Ranges
Description
Usage
Arguments
Details
Value
Note
Examples
View source: R/makeGRangesFromEnsDb.R
Description
Make GRanges from EnsDb object
Usage
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makeGRangesFromEnsDb(
object,
level = c("genes", "transcripts"),
ignoreTxVersion = TRUE
)
Arguments
object
Object.
level
character(1).
Return as genes or transcripts.
ignoreTxVersion
logical(1). Don't the include the transcript version
in the identifier. Only applies when level = "transcripts". This
simplifies identifier matching when generating a tx2gene file.
Details
Use specific EnsDb object as annotation source.
Alternatively, can pass in an EnsDb package name as a character(1).
Value
GRanges.
Note
Updated 2019-09-05.
Examples
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if ("EnsDb.Hsapiens.v75" %in% rownames(installed.packages())) {
x <- makeGRangesFromEnsDb("EnsDb.Hsapiens.v75")
}
acidgenomics/freerange documentation built on Jan. 8, 2020, 3:45 a.m.
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Description Usage Arguments Details Value Note Examples
View source: R/makeGRangesFromEnsDb.R
Description
Make GRanges from EnsDb object
Usage
1 2 3 4 5 | makeGRangesFromEnsDb(
object,
level = c("genes", "transcripts"),
ignoreTxVersion = TRUE
)
|
Arguments
object |
Object. |
level |
|
ignoreTxVersion |
|
Details
Use specific EnsDb object as annotation source.
Alternatively, can pass in an EnsDb package name as a character(1).
Value
GRanges.
Note
Updated 2019-09-05.
Examples
1 2 3 | if ("EnsDb.Hsapiens.v75" %in% rownames(installed.packages())) {
x <- makeGRangesFromEnsDb("EnsDb.Hsapiens.v75")
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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