Man pages for acidgenomics/goalie
Assertive Check Functions
| assert | Assert that certain conditions are true |
| bapply | Boolean apply |
| cause | Cause attribute |
| check | Assert check |
| check-scalar-allAreAtomic | Does the input contain elements that are all atomic? |
| check-scalar-areSameLength | Do the inputs have the same length? |
| check-scalar-formalCompress | Check the 'compress' formal argument |
| check-scalar-hasClusters | Does the input object contain clusters? |
| check-scalar-hasCpu | Does the current machine have a sufficient number of CPU... |
| check-scalar-hasDimnames | Does the input have dimnames? |
| check-scalar-hasDims | Does the input have dimensions? |
| check-scalar-hasDuplicates | Does the input have duplicates? |
| check-scalar-hasElements | Does the input have elements? |
| check-scalar-hasGithubPat | Does the current session have a GitHub personal access token? |
| check-scalar-hasInternet | Does the current session have an Internet connection? |
| check-scalar-hasLength | Does the input have a non-zero or defined length? |
| check-scalar-hasMetrics | Does the object contain quality control metrics? |
| check-scalar-hasMultipleSamples | Does the input object contain multiple samples? |
| check-scalar-hasNames | Does the input have names? |
| check-scalar-hasNonzeroRowsAndCols | Does the input contain non-zero rows and columns? |
| check-scalar-hasRam | Does the current machine have a sufficient RAM? |
| check-scalar-hasRownames | Does the input have row names? |
| check-scalar-hasSubset | Does the object contain a subset of data? |
| check-scalar-hasUniqueCols | Does the input have columns with unique values? |
| check-scalar-hasValidNames | Does the input object have syntactically valid names? |
| check-scalar-isAll | Does the input belong to or inherit all of these classes? |
| check-scalar-isAlpha | Does the input contain an alpha level? |
| check-scalar-isAny | Does the object belong to or inherit any of these classes? |
| check-scalar-isBiocDevel | Is the current Bioconductor installation under development? |
| check-scalar-isBiocParallelParam | Does the input contain a BiocParallel parameter? |
| check-scalar-isCharacter | Does the input contain a (non-empty) character vector? |
| check-scalar-isCleanSystemLibrary | Is the R system library clean? |
| check-scalar-isCondaEnabled | Is conda enabled (active) in the current R session? |
| check-scalar-isDark | Is dark mode preferred? |
| check-scalar-isDevel | Is the current session running inside R-devel? |
| check-scalar-isDocker | Is the R session running inside Docker? |
| check-scalar-isDockerEnabled | Is Docker enabled (running) on the current machine? |
| check-scalar-isFileSystemCaseSensitive | Is the file system case sensitive? |
| check-scalar-isFlag | Does the input contain a boolean flag? |
| check-scalar-isGgscale | Does the input contain a ggplot2 scale? |
| check-scalar-isHeaderLevel | Does the input contain a Markdown header level? |
| check-scalar-isHexColorFunction | Does the argument contain a function that returns hexadecimal... |
| check-scalar-isLinux | Is the operating system Linux? |
| check-scalar-isMacos | Is the operating system macOS? |
| check-scalar-isOfDimension | Does the input contain specific dimensions? |
| check-scalar-isOrganism | Is the string input a full Latin organism name? |
| check-scalar-isRstudio | Is the current R session running inside RStudio? |
| check-scalar-isScalar | Is the input scalar? |
| check-scalar-isString | Does the input contain a (non-empty) character string? |
| check-scalar-isTximport | Does the input contain a tximport list? |
| check-scalar-isUnix | Is the operating system Unix-based? |
| check-scalar-isVanilla | Is the R session running as vanilla? |
| check-scalar-isVectorish | Is the input vector(ish)? |
| check-scalar-isVscode | Is the current R session running inside Visual Studio Code? |
| check-scalar-isWindows | Is the operating system Windows? |
| check-scalar-matchesUniqueGeneNames | Do the input gene names match unique values in the... |
| check-scalar-sets | Set comparisons |
| check-scalar-validNames | Are these valid names? |
| check-vector-hasAccess | Check file system access rights |
| check-vector-isAwsS3Uri | Does the input contain an AWS S3 URI? |
| check-vector-isCompressedFile | Does the input contain a compressed file? |
| check-vector-isDirectory | Does the input contain a directory? |
| check-vector-isDuplicate | Does the input contain a duplicate value? |
| check-vector-isEqual | How does the input relate to a value? |
| check-vector-isExisting | Does the requested input exist in the environment? |
| check-vector-isExistingAwsS3Uri | Does the input contain an existing (active) AWS S3 URI? |
| check-vector-isExistingUrl | Does the input contain an existing (active) URL? |
| check-vector-isFile | Does the input contain a file? |
| check-vector-isGitRepo | Does the input contain a Git repository? |
| check-vector-isHexColor | Does the input contain hexadecimal colors? |
| check-vector-isInRange | Is the input in range? |
| check-vector-isInstalled | Is the package installed? |
| check-vector-isIntegerish | Is the input integer(ish)? |
| check-vector-isMatching | Does the string match a pattern? |
| check-vector-isPackageVersion | Is the package installed and a specific version? |
| check-vector-isSymlink | Does the input contain a symbolic link? |
| check-vector-isSystemCommand | Is a system command installed? |
| check-vector-isTempFile | Does the input contain a temporary file (that exists on... |
| check-vector-isUrl | Does the input contain a URL? |
| extPattern | File extension pattern matching |
| false | Set a false goalie check with cause attribute |
| falseFromVector | Set a scalar false goalie check with cause attribute |
| goalie | Define a goalie check classed return |
| goalie-class | goalie logical assert check return |
| goalie-package | goalie |
| nocause | Return standard logical without cause attribute |
| quietly | Perform an action quietly |
| requireNamespaces | Require package namespaces |
| setCause | Return 'FALSE' vector with causes of failure |
| show | Show an object |
| validate | Validate an S4 class |
| validateClasses | Validate expected classes |
