tmm: Trimmed mean of M-values
In acidgenomics/r-acidgenerics: Acid Genomics Generics
tmm R Documentation
Trimmed mean of M-values
Description
TMM normalization is recommended for RNA-seq data generally when the majority
of genes are not differentially expressed.
Usage
tmm(object, ...)
Arguments
object
Object.
...
Additional arguments.
Value
matrix.
Note
Only recommended for gene-level counts.
References
Robinson and Oshlack (2010).
See Also
-
edgeR::calcNormFactors().
-
edgeR::cpm().
Examples
showMethods("tmm")
acidgenomics/r-acidgenerics documentation built on April 9, 2024, 7:14 a.m.
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| tmm | R Documentation |
Trimmed mean of M-values
Description
TMM normalization is recommended for RNA-seq data generally when the majority of genes are not differentially expressed.
Usage
tmm(object, ...)
Arguments
object |
Object. |
... |
Additional arguments. |
Value
matrix.
Note
Only recommended for gene-level counts.
References
Robinson and Oshlack (2010).
See Also
-
edgeR::calcNormFactors(). -
edgeR::cpm().
Examples
showMethods("tmm")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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