standardizeCells: Standardize cell line names

In acidgenomics/r-cellosaurus: Cellosaurus

Standardize cell line names

Description

Standardize cell line names

Usage

standardizeCells(object, ...)

## S4 method for signature 'Rle'
standardizeCells(object)

## S4 method for signature 'character'
standardizeCells(object)

Arguments

object	character. Cell line names.
...	Additional arguments.

Details

Strip all non-alphanumeric characters, remove information in parentheses or brackets, and convert to uppercase.

Note that this function doesn't attempt to perform any mapping to the Cellosaurus database. For that, refer to mapCells instead.

Value

character.

Note

Updated 2023-09-21.

Examples

## character ====
object <- c("22Rv1", "Jurkat", "Ramos (RA-1)")
object <- standardizeCells(object)
print(object)

acidgenomics/r-cellosaurus documentation built on March 12, 2024, 2:37 p.m.