R/imports.R

In acidgenomics/transformer: Coercion methods for biological data

#' @importClassesFrom GenomicRanges GenomicRanges
#' @importClassesFrom IRanges IPosRanges Ranges
#' @importClassesFrom Matrix Matrix
#' @importClassesFrom S4Vectors DataFrame Vector
#' @importClassesFrom SummarizedExperiment RangedSummarizedExperiment
#'   SummarizedExperiment
#' @importClassesFrom tibble tbl_df
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#' @importFrom IRanges end start width
#' @importFrom S4Vectors DataFrame Rle as.data.frame cbind decode do.call
#'   droplevels mcols mcols<- merge metadata metadata<- na.omit
#' @importFrom SummarizedExperiment colData colData<- rowData rowData<-
#'   rowRanges
#' @importFrom acidbase bapply printString
#' @importFrom goalie allAreAtomic areDisjointSets assert hasCols hasLength
#'   hasNames hasRows hasRownames isAny isCharacter isFlag isInt isString
#'   isSubset validNames
#' @importFrom methods as getMethod is setAs setMethod setReplaceMethod
#'   signature slotNames validObject .hasSlot
#' @importFrom tibble as_tibble
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## This is needed to properly declare S4 `as()` coercion methods.
#' @importFrom methods coerce
#' @exportMethod coerce
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