API for acinostroza/TargetSearch
A package for the analysis of GC-MS metabolite profiling data
| Global functions | |
|---|---|
| $,tsLib-method | Man page |
| $,tsSample-method | Man page |
| .addLibID | Source code |
| .add_file_ext | Source code |
| .check.data.frame | Source code |
| .check_ts_sample | Source code |
| .chkrl_get_data | Source code |
| .chkrl_get_data3 | Source code |
| .chkrl_get_data4 | Source code |
| .chkrl_main | Source code |
| .chkrl_prep_data | Source code |
| .dirname | Source code |
| .fixRIfile | Source code |
| .make_RI_files | Source code |
| .mk_cdf_files | Source code |
| .ncdf_sanity | Source code |
| .open.ncdf | Source code |
| .optfun | Source code |
| .parse_file_names | Source code |
| .r_find_peaks | Source code |
| .sampNameIndex | Source code |
| .setLibrary | Source code |
| .setpath | Source code |
| .trim_file_ext | Source code |
| .validNCDF | Source code |
| .validateRImatrix | Source code |
| CDFfiles | Man page |
| CDFfiles,tsSample-method | Man page |
| CDFfiles<- | Man page |
| CDFfiles<-,tsSample-method | Man page |
| CDFpath | Man page |
| CDFpath,tsSample-method | Man page |
| CDFpath<- | Man page |
| CDFpath<-,tsSample-method | Man page |
| FAMEoutliers | Man page |
| FindAllPeaks | Man page |
| FindPeaks | Man page |
| ImportFameSettings | Man page |
| ImportLibrary | Man page Source code |
| ImportLibrary.msp | Man page Source code |
| ImportLibrary.tab | Man page Source code |
| ImportSamples | Man page |
| ImportSamplesFromDir | Man page |
| Intensity | Man page |
| Intensity,tsMSdata-method | Man page |
| Intensity<- | Man page |
| Intensity<-,tsMSdata-method | Man page |
| NetCDFPeakFinding | Man page Source code |
| Profile | Man page Source code |
| ProfileCleanUp | Man page |
| ProgressBar | Source code |
| RIcorrect | Man page Source code |
| RIdev | Man page |
| RIdev,tsLib-method | Man page |
| RIdev<- | Man page |
| RIdev<-,tsLib-method | Man page |
| RIfiles | Man page |
| RIfiles,tsSample-method | Man page |
| RIfiles<- | Man page |
| RIfiles<-,tsSample-method | Man page |
| RImatrix | Man page |
| RIpath | Man page |
| RIpath,tsSample-method | Man page |
| RIpath<- | Man page |
| RIpath<-,tsSample-method | Man page |
| Score | Source code |
| Spectra | Source code |
| TSExample | Man page |
| TargetSearch | Man page |
| TargetSearch-defunct | Man page |
| TargetSearch-deprecated | Man page |
| TargetSearch-package | Man page |
| TargetSearchGUI | Man page Source code |
| Top.Masses | Source code |
| Write.Results | Man page |
| [,tsLib-method | Man page |
| [,tsRim-method | Man page |
| [,tsSample-method | Man page |
| `.c_find_peaks` | Source code |
| `.check.file.exists` | Source code |
| `.convert_ri_file` | Source code |
| `.detect.files` | Source code |
| `.find_uniq_files` | Source code |
| `.is_ts_ncdf4` | Source code |
| `.ncdf4_write` | Source code |
| `.ncdf_info` | Source code |
| `.peakCDFextraction3` | Source code |
| `.peakCDFextraction4` | Source code |
| `.peakExtractWrap` | Source code |
| `.rbind` | Source code |
| `.remove_empty` | Source code |
| `FAMEoutliers` | Source code |
| `FindAllPeaks` | Source code |
| `FindPeaks` | Source code |
| `ImportFameSettings` | Source code |
| `ImportSamplesFromDir` | Source code |
| `ImportSamples` | Source code |
| `ProfileCleanUp` | Source code |
| `Write.Results` | Source code |
| `bin2text` | Source code |
| `checkRimLim` | Source code |
| `dayNorm` | Source code |
| `file_type` | Source code |
| `get.columns.name.default` | Source code |
| `get.columns.name` | Source code |
| `get.file.header` | Source code |
| `getAllPeaks` | Source code |
| `makeIndex` | Source code |
| `medianNorm` | Source code |
| `ncdf4_convert_from_path` | Source code |
| `ncdf4_convert` | Source code |
| `ncdf4_data_extract` | Source code |
| `ncdf4_plot_peak` | Source code |
| `ncdf4_update_ri` | Source code |
| `ncdf4_write` | Source code |
| `peakCDFextraction` | Source code |
| `plotFAME` | Source code |
| `plotPeakRI` | Source code |
| `plotRefSpectra` | Source code |
| `quantMatrix` | Source code |
| `readRIBin` | Source code |
| `readRetTimes` | Source code |
| `ri_data_extract_text` | Source code |
| `ri_data_extract` | Source code |
| `ri_plot_peak` | Source code |
| `rt2ri` | Source code |
| `spectrum_label_pos` | Source code |
| `text2bin` | Source code |
| `updateRI` | Source code |
| `writeRIBin` | Source code |
| `writeRIFile` | Source code |
| approxRT | Source code |
| as.list,tsMSdata-method | Man page |
| as.list.tsMSdata | Man page |
| as.list.tsMSdata,tsMSdata-method | Man page |
| as.list.tsProfile | Man page |
| as.list.tsProfile,tsMSdata-method | Man page |
| baseline | Man page Source code |
| baselineCorrection | Man page Source code |
| baselineCorrectionQuant | Man page Source code |
| baseplot | Source code |
| best_peak | Source code |
| bin2text | Man page |
| c,tsLib-method | Man page |
| c,tsRim-method | Man page |
| c,tsSample-method | Man page |
| checkRimLim | Man page |
| corRI | Man page |
| fileFormat | Man page |
| fileFormat,tsSample-method | Man page |
| fileFormat<- | Man page |
| fileFormat<-,tsSample-method | Man page |
| findRetentionTime | Source code |
| fixRI | Man page Source code |
| fixRIcorrection | Man page Source code |
| fixRIcorrection-defunct | Man page |
| getDays | Source code |
| has_na | Source code |
| hpf | Source code |
| is.null_or_na | Source code |
| is.sod | Source code |
| is.tsLib | Source code |
| is.tsMSdata | Source code |
| is.tsProfile | Source code |
| is.tsRim | Source code |
| is.tsSample | Source code |
| length,tsLib-method | Man page |
| length,tsRim-method | Man page |
| length,tsSample-method | Man page |
| libData | Man page |
| libData,tsLib-method | Man page |
| libData<- | Man page |
| libData<-,tsLib-method | Man page |
| libId | Man page |
| libId,tsLib-method | Man page |
| libName | Man page |
| libName,tsLib-method | Man page |
| libName<- | Man page |
| libName<-,tsLib-method | Man page |
| libRI | Man page |
| libRI,tsLib-method | Man page |
| libRI<- | Man page |
| libRI<-,tsLib-method | Man page |
| makeIndex | Man page |
| medRI | Man page |
| medRI,tsLib-method | Man page |
| medRI<- | Man page |
| medRI<-,tsLib-method | Man page |
| medianRILib | Man page Source code |
| metabProfile | Man page |
| ncdf4Convert | Man page |
| ncdf4Convert,tsSample-method | Man page |
| ncdf4_convert | Man page |
| ncdf4_convert_from_path | Man page |
| ncdf4_data_extract | Man page |
| ncdf4_plot_peak | Man page |
| ncdf4_update_ri | Man page |
| peakCDFextraction | Man page |
| peakData | Man page |
| peakFind | Man page Source code |
| plot.NA | Source code |
| plotAllRIdev | Man page Source code |
| plotAllSpectra | Man page Source code |
| plotFAME | Man page |
| plotPeak | Man page Source code |
| plotPeakRI | Man page |
| plotPeakSimple | Man page Source code |
| plotRIdev | Man page Source code |
| plotRefSpectra | Man page |
| plotSpectra | Man page Source code |
| profileInfo | Man page |
| profileInfo,tsProfile-method | Man page |
| profileInfo<- | Man page |
| profileInfo<-,tsProfile-method | Man page |
| profileInt | Man page |
| profileInt,tsProfile-method | Man page |
| profileInt<- | Man page |
| profileInt<-,tsProfile-method | Man page |
| profileRI | Man page |
| profileRI,tsProfile-method | Man page |
| profileRI<- | Man page |
| profileRI<-,tsProfile-method | Man page |
| profileRT | Man page |
| profileRT,tsProfile-method | Man page |
| profileRT<- | Man page |
| profileRT<-,tsProfile-method | Man page |
| quantMass | Man page |
| quantMass,tsLib-method | Man page |
| quantMass<- | Man page |
| quantMass<-,tsLib-method | Man page |
| quantMatrix | Man page |
| rankGroups | Source code |
| read.msp | Source code |
| refLib | Man page |
| refLib,tsLib-method | Man page |
| refLibrary | Man page |
| retIndex | Man page |
| retIndex,tsMSdata-method | Man page |
| retIndex<- | Man page |
| retIndex<-,tsMSdata-method | Man page |
| retTime | Man page |
| retTime,tsMSdata-method | Man page |
| retTime<- | Man page |
| retTime<-,tsMSdata-method | Man page |
| ri2rt | Man page Source code |
| riMatrix | Man page Source code |
| ri_data_extract | Man page |
| ri_plot_peak | Man page |
| rimLimits | Man page |
| rimLimits,tsRim-method | Man page |
| rimLimits<- | Man page |
| rimLimits<-,tsRim-method | Man page |
| rimMass | Man page |
| rimMass,tsRim-method | Man page |
| rimMass<- | Man page |
| rimMass<-,tsRim-method | Man page |
| rimStandard | Man page |
| rimStandard,tsRim-method | Man page |
| rimStandard<- | Man page |
| rimStandard<-,tsRim-method | Man page |
| rt2ri | Man page |
| sampleData | Man page |
| sampleData,tsSample-method | Man page |
| sampleData<- | Man page |
| sampleData<-,tsSample-method | Man page |
| sampleDays | Man page |
| sampleDays,tsSample-method | Man page |
| sampleDays<- | Man page |
| sampleDays<-,tsSample-method | Man page |
| sampleDescription | Man page |
| sampleNames | Man page |
| sampleNames,tsSample-method | Man page |
| sampleNames<- | Man page |
| sampleNames<-,tsSample-method | Man page |
| sampleRI | Man page Source code |
| selMass | Man page |
| selMass,tsLib-method | Man page |
| selMass<- | Man page |
| selMass<-,tsLib-method | Man page |
| setProgressBar | Source code |
| show,tsLib-method | Man page |
| show,tsMSdata-method | Man page |
| show,tsProfile-method | Man page |
| show,tsSample-method | Man page |
| spectra | Man page |
| spectra,tsLib-method | Man page |
| spectra<- | Man page |
| spectra<-,tsLib-method | Man page |
| text2bin | Man page |
| timeGroups | Source code |
| topMass | Man page |
| topMass,tsLib-method | Man page |
| topMass<- | Man page |
| topMass<-,tsLib-method | Man page |
| tsLib-class | Man page |
| tsMSdata-class | Man page |
| tsProfile-class | Man page |
| tsRim-class | Man page |
| tsSample-class | Man page |
| tsUpdate | Man page |
| tsUpdate,tsSample-method | Man page |
| updateRI | Man page |
| validMSdataObject | Source code |
| windowingStep | Source code |
| writeLibText | Man page Source code |
| writeMSP | Man page |
