API for acinostroza/TargetSearch
A package for the analysis of GC-MS metabolite profiling data

Global functions
$,tsLib-method Man page
$,tsSample-method Man page
.addLibID Source code
.add_file_ext Source code
.check.data.frame Source code
.check_ts_sample Source code
.chkrl_get_data Source code
.chkrl_get_data3 Source code
.chkrl_get_data4 Source code
.chkrl_main Source code
.chkrl_prep_data Source code
.dirname Source code
.fixRIfile Source code
.make_RI_files Source code
.mk_cdf_files Source code
.ncdf_sanity Source code
.open.ncdf Source code
.optfun Source code
.parse_file_names Source code
.r_find_peaks Source code
.sampNameIndex Source code
.setLibrary Source code
.setpath Source code
.trim_file_ext Source code
.validNCDF Source code
.validateRImatrix Source code
CDFfiles Man page
CDFfiles,tsSample-method Man page
CDFfiles<- Man page
CDFfiles<-,tsSample-method Man page
CDFpath Man page
CDFpath,tsSample-method Man page
CDFpath<- Man page
CDFpath<-,tsSample-method Man page
FAMEoutliers Man page
FindAllPeaks Man page
FindPeaks Man page
ImportFameSettings Man page
ImportLibrary Man page Source code
ImportLibrary.msp Man page Source code
ImportLibrary.tab Man page Source code
ImportSamples Man page
ImportSamplesFromDir Man page
Intensity Man page
Intensity,tsMSdata-method Man page
Intensity<- Man page
Intensity<-,tsMSdata-method Man page
NetCDFPeakFinding Man page Source code
Profile Man page Source code
ProfileCleanUp Man page
ProgressBar Source code
RIcorrect Man page Source code
RIdev Man page
RIdev,tsLib-method Man page
RIdev<- Man page
RIdev<-,tsLib-method Man page
RIfiles Man page
RIfiles,tsSample-method Man page
RIfiles<- Man page
RIfiles<-,tsSample-method Man page
RImatrix Man page
RIpath Man page
RIpath,tsSample-method Man page
RIpath<- Man page
RIpath<-,tsSample-method Man page
Score Source code
Spectra Source code
TSExample Man page
TargetSearch Man page
TargetSearch-defunct Man page
TargetSearch-deprecated Man page
TargetSearch-package Man page
TargetSearchGUI Man page Source code
Top.Masses Source code
Write.Results Man page
[,tsLib-method Man page
[,tsRim-method Man page
[,tsSample-method Man page
`.c_find_peaks` Source code
`.check.file.exists` Source code
`.convert_ri_file` Source code
`.detect.files` Source code
`.find_uniq_files` Source code
`.is_ts_ncdf4` Source code
`.ncdf4_write` Source code
`.ncdf_info` Source code
`.peakCDFextraction3` Source code
`.peakCDFextraction4` Source code
`.peakExtractWrap` Source code
`.rbind` Source code
`.remove_empty` Source code
`FAMEoutliers` Source code
`FindAllPeaks` Source code
`FindPeaks` Source code
`ImportFameSettings` Source code
`ImportSamplesFromDir` Source code
`ImportSamples` Source code
`ProfileCleanUp` Source code
`Write.Results` Source code
`bin2text` Source code
`checkRimLim` Source code
`dayNorm` Source code
`file_type` Source code
`get.columns.name.default` Source code
`get.columns.name` Source code
`get.file.header` Source code
`getAllPeaks` Source code
`makeIndex` Source code
`medianNorm` Source code
`ncdf4_convert_from_path` Source code
`ncdf4_convert` Source code
`ncdf4_data_extract` Source code
`ncdf4_plot_peak` Source code
`ncdf4_update_ri` Source code
`ncdf4_write` Source code
`peakCDFextraction` Source code
`plotFAME` Source code
`plotPeakRI` Source code
`plotRefSpectra` Source code
`quantMatrix` Source code
`readRIBin` Source code
`readRetTimes` Source code
`ri_data_extract_text` Source code
`ri_data_extract` Source code
`ri_plot_peak` Source code
`rt2ri` Source code
`spectrum_label_pos` Source code
`text2bin` Source code
`updateRI` Source code
`writeRIBin` Source code
`writeRIFile` Source code
approxRT Source code
as.list,tsMSdata-method Man page
as.list.tsMSdata Man page
as.list.tsMSdata,tsMSdata-method Man page
as.list.tsProfile Man page
as.list.tsProfile,tsMSdata-method Man page
baseline Man page Source code
baselineCorrection Man page Source code
baselineCorrectionQuant Man page Source code
baseplot Source code
best_peak Source code
bin2text Man page
c,tsLib-method Man page
c,tsRim-method Man page
c,tsSample-method Man page
checkRimLim Man page
corRI Man page
fileFormat Man page
fileFormat,tsSample-method Man page
fileFormat<- Man page
fileFormat<-,tsSample-method Man page
findRetentionTime Source code
fixRI Man page Source code
fixRIcorrection Man page Source code
fixRIcorrection-defunct Man page
getDays Source code
has_na Source code
hpf Source code
is.null_or_na Source code
is.sod Source code
is.tsLib Source code
is.tsMSdata Source code
is.tsProfile Source code
is.tsRim Source code
is.tsSample Source code
length,tsLib-method Man page
length,tsRim-method Man page
length,tsSample-method Man page
libData Man page
libData,tsLib-method Man page
libData<- Man page
libData<-,tsLib-method Man page
libId Man page
libId,tsLib-method Man page
libName Man page
libName,tsLib-method Man page
libName<- Man page
libName<-,tsLib-method Man page
libRI Man page
libRI,tsLib-method Man page
libRI<- Man page
libRI<-,tsLib-method Man page
makeIndex Man page
medRI Man page
medRI,tsLib-method Man page
medRI<- Man page
medRI<-,tsLib-method Man page
medianRILib Man page Source code
metabProfile Man page
ncdf4Convert Man page
ncdf4Convert,tsSample-method Man page
ncdf4_convert Man page
ncdf4_convert_from_path Man page
ncdf4_data_extract Man page
ncdf4_plot_peak Man page
ncdf4_update_ri Man page
peakCDFextraction Man page
peakData Man page
peakFind Man page Source code
plot.NA Source code
plotAllRIdev Man page Source code
plotAllSpectra Man page Source code
plotFAME Man page
plotPeak Man page Source code
plotPeakRI Man page
plotPeakSimple Man page Source code
plotRIdev Man page Source code
plotRefSpectra Man page
plotSpectra Man page Source code
profileInfo Man page
profileInfo,tsProfile-method Man page
profileInfo<- Man page
profileInfo<-,tsProfile-method Man page
profileInt Man page
profileInt,tsProfile-method Man page
profileInt<- Man page
profileInt<-,tsProfile-method Man page
profileRI Man page
profileRI,tsProfile-method Man page
profileRI<- Man page
profileRI<-,tsProfile-method Man page
profileRT Man page
profileRT,tsProfile-method Man page
profileRT<- Man page
profileRT<-,tsProfile-method Man page
quantMass Man page
quantMass,tsLib-method Man page
quantMass<- Man page
quantMass<-,tsLib-method Man page
quantMatrix Man page
rankGroups Source code
read.msp Source code
refLib Man page
refLib,tsLib-method Man page
refLibrary Man page
retIndex Man page
retIndex,tsMSdata-method Man page
retIndex<- Man page
retIndex<-,tsMSdata-method Man page
retTime Man page
retTime,tsMSdata-method Man page
retTime<- Man page
retTime<-,tsMSdata-method Man page
ri2rt Man page Source code
riMatrix Man page Source code
ri_data_extract Man page
ri_plot_peak Man page
rimLimits Man page
rimLimits,tsRim-method Man page
rimLimits<- Man page
rimLimits<-,tsRim-method Man page
rimMass Man page
rimMass,tsRim-method Man page
rimMass<- Man page
rimMass<-,tsRim-method Man page
rimStandard Man page
rimStandard,tsRim-method Man page
rimStandard<- Man page
rimStandard<-,tsRim-method Man page
rt2ri Man page
sampleData Man page
sampleData,tsSample-method Man page
sampleData<- Man page
sampleData<-,tsSample-method Man page
sampleDays Man page
sampleDays,tsSample-method Man page
sampleDays<- Man page
sampleDays<-,tsSample-method Man page
sampleDescription Man page
sampleNames Man page
sampleNames,tsSample-method Man page
sampleNames<- Man page
sampleNames<-,tsSample-method Man page
sampleRI Man page Source code
selMass Man page
selMass,tsLib-method Man page
selMass<- Man page
selMass<-,tsLib-method Man page
setProgressBar Source code
show,tsLib-method Man page
show,tsMSdata-method Man page
show,tsProfile-method Man page
show,tsSample-method Man page
spectra Man page
spectra,tsLib-method Man page
spectra<- Man page
spectra<-,tsLib-method Man page
text2bin Man page
timeGroups Source code
topMass Man page
topMass,tsLib-method Man page
topMass<- Man page
topMass<-,tsLib-method Man page
tsLib-class Man page
tsMSdata-class Man page
tsProfile-class Man page
tsRim-class Man page
tsSample-class Man page
tsUpdate Man page
tsUpdate,tsSample-method Man page
updateRI Man page
validMSdataObject Source code
windowingStep Source code
writeLibText Man page Source code
writeMSP Man page
acinostroza/TargetSearch documentation built on Nov. 22, 2024, 3:31 p.m.