utils | R Documentation |
A collection of simple functions to quickly access the
TargetSearchData
data files. These functions are used throughout
TargetSearch
examples. See details for an
explanation of each function.
tsd_path()
tsd_data_path(datapath='gc-ms-data')
tsd_file_path(filename, ...)
tsd_cdffiles(...)
tsd_rifiles(...)
datapath |
A |
filename |
A |
... |
parameters passed to |
tsd_path()
returns the path of TargetSearchData
. It is
a shorthand for find.package('TargetSearchData')
.
tsd_data_path()
returns the full path of the directory where the
CDFs
and other example files of TargetSearch
are located. This path is hard-coded to 'gc-ms-data'
. The path can be
changed by setting the data path parameter datapath
, though this is
unnecessary in general.
tsd_file_path()
returns the absolute path of one or more files
(filename
) inside the data directory (datapath
). The function
checks whether the file exist and fails if not. The name of the first
missing file is printed.
tsd_cdffiles()
and tsd_rifiles()
are convenience functions that
return the list of NetCDF files and RI files contained in the data path,
respectively.
All functions return a character vector. They are paths to files or directories
within TargetSearchData
. The functions tsd_cdffiles
and
tsd_rifiles
return a list of files.
Alvaro Cuadros-Inostroza
The package TargetSearch
# get TargetSearchData path
path <- tsd_path()
# get TargetSearchData data path
path <- tsd_data_path()
# get the path to the files "samples.txt" in TargetSearchData
path <- tsd_file_path('samples.txt')
# get the list of CDF files
cdffiles <- tsd_cdffiles()
# get the list of RI files
rifiles <- tsd_rifiles()
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