data-raw/fetch_isd-history.md
In adamhsparks/weathR: Global Surface Summary of the Day ('GSOD') Weather Data Client
title: "Fetch and Clean 'isd_history.csv' File"
author: "Adam H. Sparks"
date: "2025-05-03"
output: github_document
PRE.fansi SPAN {padding-top: .25em; padding-bottom: .25em};
Introduction
The "isd_history.csv" file details GSOD station metadata.
These data include the start and stop years used by {GSODR} to pre-check requests before querying the server for download and the country code used by {GSODR} when sub-setting for requests by country.
The following checks are performed on the raw data file before inclusion in {GSODR},
-
Check for valid lon and lat values;
-
isd_history where latitude or longitude are NA or both 0 are removed leaving only properly georeferenced stations,
-
isd_history where latitude is < -90˚ or > 90˚ are removed,
-
isd_history where longitude is < -180˚ or > 180˚ are removed.
-
A new field, STNID, a concatenation of the USAF and WBAN fields, is added.
Data Processing
Set up workspace
library("sessioninfo")
library("skimr")
## Error in library("skimr"): there is no package called 'skimr'
library("countrycode")
library("data.table")
Download and clean data
# download data
new_isd_history <- fread("https://www1.ncdc.noaa.gov/pub/data/noaa/isd-history.csv")
Add/drop columns and save to disk
# pad WBAN where necessary
new_isd_history[, WBAN := sprintf("%05d", WBAN)]
# add STNID column
new_isd_history[, STNID := paste(USAF, WBAN, sep = "-")]
setcolorder(new_isd_history, "STNID")
setnames(new_isd_history, "STATION NAME", "NAME")
# remove stations where LAT or LON is NA
new_isd_history <- na.omit(new_isd_history, cols = c("LAT", "LON"))
# remove extra columns
new_isd_history[, c("USAF", "WBAN", "ICAO") := NULL]
Add country names based on FIPS
new_isd_history <-
new_isd_history[setDT(countrycode::codelist), on = c("CTRY" = "fips")]
new_isd_history <- new_isd_history[, c(
"STNID",
"NAME",
"LAT",
"LON",
"ELEV(M)",
"CTRY",
"STATE",
"BEGIN",
"END",
"country.name.en",
"iso2c",
"iso3c"
)]
# clean data
new_isd_history[new_isd_history == -999] <- NA
new_isd_history[new_isd_history == -999.9] <- NA
new_isd_history <-
new_isd_history[!is.na(new_isd_history$LAT) &
!is.na(new_isd_history$LON),]
new_isd_history <-
new_isd_history[new_isd_history$LAT != 0 &
new_isd_history$LON != 0,]
new_isd_history <-
new_isd_history[new_isd_history$LAT > -90 &
new_isd_history$LAT < 90,]
new_isd_history <-
new_isd_history[new_isd_history$LON > -180 &
new_isd_history$LON < 180,]
# set colnames to upper case
names(new_isd_history) <- toupper(names(new_isd_history))
setnames(new_isd_history,
old = "COUNTRY.NAME.EN",
new = "COUNTRY_NAME")
# set country names to be upper case for easier internal verifications
new_isd_history[, COUNTRY_NAME := toupper(COUNTRY_NAME)]
# set key for joins when processing CSV files
setkeyv(new_isd_history, "STNID")
Show changes from last release
# ensure we aren't using a locally installed dev version
install.packages("GSODR", repos = "https://cloud.r-project.org/")
## Installing package into '/Users/adamsparks/Library/R/arm64/4.5/library'
## (as 'lib' is unspecified)
##
## The downloaded binary packages are in
## /var/folders/vz/txwj1tx51txgw7zv_b5c5_3m0000gn/T//Rtmp96xxfr/downloaded_packages
load(system.file("extdata", "isd_history.rda", package = "GSODR"))
# select only the cols of interest
x <- names(isd_history)
new_isd_history <- new_isd_history[, ..x]
(isd_diff <- diffobj::diffPrint(new_isd_history, isd_history))
## No visible differences between objects.
## < new_isd_history
## > isd_history
## @@ 1,40 / 1,40 @@
## Key: <STNID>
## STNID NAME LAT
## <char> <char> <num>
## 1: 008268-99999 WXPOD8278 32.950
## 2: 010010-99999 JAN MAYEN(NOR-NAVY) 70.933
## 3: 010014-99999 SORSTOKKEN 59.792
## 4: 010015-99999 BRINGELAND 61.383
## 5: 010016-99999 RORVIK/RYUM 64.850
## ---
## 27933: A07355-00241 VIROQUA MUNICIPAL AIRPORT 43.579
## 27934: A07357-00182 ELBOW LAKE MUNICIPAL PRIDE OF THE PRAIRIE AIRPORT 45.986
## 27935: A07359-00240 IONIA COUNTY AIRPORT 42.938
## 27936: A51255-00445 DEMOPOLIS MUNICIPAL AIRPORT 32.464
## 27937: A51256-00451 BRANSON WEST MUNICIPAL EMERSON FIELD AIRPORT 36.699
## LON ELEV(M) CTRY STATE BEGIN END COUNTRY_NAME ISO2C
## <num> <num> <char> <char> <int> <int> <char> <char>
## 1: 65.567 1156.7 AF 20100519 20120323 AFGHANISTAN AF
## 2: -8.667 9.0 NO 19310101 20250430 NORWAY NO
## 3: 5.341 48.8 NO 19861120 20250430 NORWAY NO
## 4: 5.867 327.0 NO 19870117 19971231 NORWAY NO
## 5: 11.233 14.0 NO 19870116 19910806 NORWAY NO
## ---
## 27933: -90.913 394.1 US WI 20140731 20250430 UNITED STATES US
## 27934: -95.992 367.3 US MN 20140731 20250430 UNITED STATES US
## 27935: -85.061 249.0 US MI 20140731 20250501 UNITED STATES US
## 27936: -87.954 34.1 US AL 20140731 20250501 UNITED STATES US
## 27937: -93.402 411.2 US MO 20140731 20250501 UNITED STATES US
## ISO3C
## <char>
## 1: AFG
## 2: NOR
## 3: NOR
## 4: NOR
## 5: NOR
## ---
## 27933: USA
## 27934: USA
## 27935: USA
## 27936: USA
## 27937: USA
rm(isd_history)
isd_history <- new_isd_history
View and save the data
str(isd_history)
## Classes 'data.table' and 'data.frame': 27937 obs. of 12 variables:
## $ STNID : chr "008268-99999" "010010-99999" "010014-99999" "010015-99999" ...
## $ NAME : chr "WXPOD8278" "JAN MAYEN(NOR-NAVY)" "SORSTOKKEN" "BRINGELAND" ...
## $ LAT : num 33 70.9 59.8 61.4 64.8 ...
## $ LON : num 65.57 -8.67 5.34 5.87 11.23 ...
## $ ELEV(M) : num 1156.7 9 48.8 327 14 ...
## $ CTRY : chr "AF" "NO" "NO" "NO" ...
## $ STATE : chr "" "" "" "" ...
## $ BEGIN : int 20100519 19310101 19861120 19870117 19870116 19880320 19861109 19850601 19730101 19310103 ...
## $ END : int 20120323 20250430 20250430 19971231 19910806 19971226 20250430 20250430 19970801 20041030 ...
## $ COUNTRY_NAME: chr "AFGHANISTAN" "NORWAY" "NORWAY" "NORWAY" ...
## $ ISO2C : chr "AF" "NO" "NO" "NO" ...
## $ ISO3C : chr "AFG" "NOR" "NOR" "NOR" ...
## - attr(*, ".internal.selfref")=<externalptr>
## - attr(*, "sorted")= chr "STNID"
# write rda file to disk for use with GSODR package
save(isd_history,
file = "../inst/extdata/isd_history.rda",
compress = "bzip2")
save(isd_diff,
file = "../inst/extdata/isd_diff.rda",
compress = "bzip2")
Notes
NOAA policy
Users of these data should take into account the following (from the NCEI website):
The following data and products may have conditions placed on their international commercial use. They can be used within the U.S. or for non-commercial international activities without restriction. The non-U.S. data cannot be redistributed for commercial purposes. Re-distribution of these data by others must provide this same notification. A log of IP addresses accessing these data and products will be maintained and may be made available to data providers.
For details, please consult: WMO Resolution 40. NOAA Policy
R System Information
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## setting value
## version R version 4.5.0 (2025-04-11)
## os macOS Sequoia 15.4.1
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## collate en_AU.UTF-8
## ctype en_AU.UTF-8
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## date 2025-05-03
## pandoc 3.6.4 @ /opt/homebrew/bin/pandoc
## quarto 1.7.29 @ /usr/local/bin/quarto
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## V ── Loaded and on-disk version mismatch.
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title: "Fetch and Clean 'isd_history.csv' File" author: "Adam H. Sparks" date: "2025-05-03" output: github_document
PRE.fansi SPAN {padding-top: .25em; padding-bottom: .25em};Introduction
The "isd_history.csv" file details GSOD station metadata. These data include the start and stop years used by {GSODR} to pre-check requests before querying the server for download and the country code used by {GSODR} when sub-setting for requests by country. The following checks are performed on the raw data file before inclusion in {GSODR},
-
Check for valid lon and lat values;
-
isd_history where latitude or longitude are
NAor both 0 are removed leaving only properly georeferenced stations, -
isd_history where latitude is < -90˚ or > 90˚ are removed,
-
isd_history where longitude is < -180˚ or > 180˚ are removed.
-
-
A new field, STNID, a concatenation of the USAF and WBAN fields, is added.
Data Processing
Set up workspace
library("sessioninfo")
library("skimr")
## Error in library("skimr"): there is no package called 'skimr'
library("countrycode")
library("data.table")
Download and clean data
# download data
new_isd_history <- fread("https://www1.ncdc.noaa.gov/pub/data/noaa/isd-history.csv")
Add/drop columns and save to disk
# pad WBAN where necessary
new_isd_history[, WBAN := sprintf("%05d", WBAN)]
# add STNID column
new_isd_history[, STNID := paste(USAF, WBAN, sep = "-")]
setcolorder(new_isd_history, "STNID")
setnames(new_isd_history, "STATION NAME", "NAME")
# remove stations where LAT or LON is NA
new_isd_history <- na.omit(new_isd_history, cols = c("LAT", "LON"))
# remove extra columns
new_isd_history[, c("USAF", "WBAN", "ICAO") := NULL]
Add country names based on FIPS
new_isd_history <-
new_isd_history[setDT(countrycode::codelist), on = c("CTRY" = "fips")]
new_isd_history <- new_isd_history[, c(
"STNID",
"NAME",
"LAT",
"LON",
"ELEV(M)",
"CTRY",
"STATE",
"BEGIN",
"END",
"country.name.en",
"iso2c",
"iso3c"
)]
# clean data
new_isd_history[new_isd_history == -999] <- NA
new_isd_history[new_isd_history == -999.9] <- NA
new_isd_history <-
new_isd_history[!is.na(new_isd_history$LAT) &
!is.na(new_isd_history$LON),]
new_isd_history <-
new_isd_history[new_isd_history$LAT != 0 &
new_isd_history$LON != 0,]
new_isd_history <-
new_isd_history[new_isd_history$LAT > -90 &
new_isd_history$LAT < 90,]
new_isd_history <-
new_isd_history[new_isd_history$LON > -180 &
new_isd_history$LON < 180,]
# set colnames to upper case
names(new_isd_history) <- toupper(names(new_isd_history))
setnames(new_isd_history,
old = "COUNTRY.NAME.EN",
new = "COUNTRY_NAME")
# set country names to be upper case for easier internal verifications
new_isd_history[, COUNTRY_NAME := toupper(COUNTRY_NAME)]
# set key for joins when processing CSV files
setkeyv(new_isd_history, "STNID")
Show changes from last release
# ensure we aren't using a locally installed dev version
install.packages("GSODR", repos = "https://cloud.r-project.org/")
## Installing package into '/Users/adamsparks/Library/R/arm64/4.5/library'
## (as 'lib' is unspecified)
##
## The downloaded binary packages are in
## /var/folders/vz/txwj1tx51txgw7zv_b5c5_3m0000gn/T//Rtmp96xxfr/downloaded_packages
load(system.file("extdata", "isd_history.rda", package = "GSODR"))
# select only the cols of interest
x <- names(isd_history)
new_isd_history <- new_isd_history[, ..x]
(isd_diff <- diffobj::diffPrint(new_isd_history, isd_history))
## No visible differences between objects.
## < new_isd_history
## > isd_history
## @@ 1,40 / 1,40 @@
## Key: <STNID>
## STNID NAME LAT
## <char> <char> <num>
## 1: 008268-99999 WXPOD8278 32.950
## 2: 010010-99999 JAN MAYEN(NOR-NAVY) 70.933
## 3: 010014-99999 SORSTOKKEN 59.792
## 4: 010015-99999 BRINGELAND 61.383
## 5: 010016-99999 RORVIK/RYUM 64.850
## ---
## 27933: A07355-00241 VIROQUA MUNICIPAL AIRPORT 43.579
## 27934: A07357-00182 ELBOW LAKE MUNICIPAL PRIDE OF THE PRAIRIE AIRPORT 45.986
## 27935: A07359-00240 IONIA COUNTY AIRPORT 42.938
## 27936: A51255-00445 DEMOPOLIS MUNICIPAL AIRPORT 32.464
## 27937: A51256-00451 BRANSON WEST MUNICIPAL EMERSON FIELD AIRPORT 36.699
## LON ELEV(M) CTRY STATE BEGIN END COUNTRY_NAME ISO2C
## <num> <num> <char> <char> <int> <int> <char> <char>
## 1: 65.567 1156.7 AF 20100519 20120323 AFGHANISTAN AF
## 2: -8.667 9.0 NO 19310101 20250430 NORWAY NO
## 3: 5.341 48.8 NO 19861120 20250430 NORWAY NO
## 4: 5.867 327.0 NO 19870117 19971231 NORWAY NO
## 5: 11.233 14.0 NO 19870116 19910806 NORWAY NO
## ---
## 27933: -90.913 394.1 US WI 20140731 20250430 UNITED STATES US
## 27934: -95.992 367.3 US MN 20140731 20250430 UNITED STATES US
## 27935: -85.061 249.0 US MI 20140731 20250501 UNITED STATES US
## 27936: -87.954 34.1 US AL 20140731 20250501 UNITED STATES US
## 27937: -93.402 411.2 US MO 20140731 20250501 UNITED STATES US
## ISO3C
## <char>
## 1: AFG
## 2: NOR
## 3: NOR
## 4: NOR
## 5: NOR
## ---
## 27933: USA
## 27934: USA
## 27935: USA
## 27936: USA
## 27937: USA
rm(isd_history)
isd_history <- new_isd_history
View and save the data
str(isd_history)
## Classes 'data.table' and 'data.frame': 27937 obs. of 12 variables:
## $ STNID : chr "008268-99999" "010010-99999" "010014-99999" "010015-99999" ...
## $ NAME : chr "WXPOD8278" "JAN MAYEN(NOR-NAVY)" "SORSTOKKEN" "BRINGELAND" ...
## $ LAT : num 33 70.9 59.8 61.4 64.8 ...
## $ LON : num 65.57 -8.67 5.34 5.87 11.23 ...
## $ ELEV(M) : num 1156.7 9 48.8 327 14 ...
## $ CTRY : chr "AF" "NO" "NO" "NO" ...
## $ STATE : chr "" "" "" "" ...
## $ BEGIN : int 20100519 19310101 19861120 19870117 19870116 19880320 19861109 19850601 19730101 19310103 ...
## $ END : int 20120323 20250430 20250430 19971231 19910806 19971226 20250430 20250430 19970801 20041030 ...
## $ COUNTRY_NAME: chr "AFGHANISTAN" "NORWAY" "NORWAY" "NORWAY" ...
## $ ISO2C : chr "AF" "NO" "NO" "NO" ...
## $ ISO3C : chr "AFG" "NOR" "NOR" "NOR" ...
## - attr(*, ".internal.selfref")=<externalptr>
## - attr(*, "sorted")= chr "STNID"
# write rda file to disk for use with GSODR package
save(isd_history,
file = "../inst/extdata/isd_history.rda",
compress = "bzip2")
save(isd_diff,
file = "../inst/extdata/isd_diff.rda",
compress = "bzip2")
Notes
NOAA policy
Users of these data should take into account the following (from the NCEI website):
The following data and products may have conditions placed on their international commercial use. They can be used within the U.S. or for non-commercial international activities without restriction. The non-U.S. data cannot be redistributed for commercial purposes. Re-distribution of these data by others must provide this same notification. A log of IP addresses accessing these data and products will be maintained and may be made available to data providers. For details, please consult: WMO Resolution 40. NOAA Policy
R System Information
## ─ Session info ───────────────────────────────────────────────────────────────
## setting value
## version R version 4.5.0 (2025-04-11)
## os macOS Sequoia 15.4.1
## system aarch64, darwin20
## ui X11
## language (EN)
## collate en_AU.UTF-8
## ctype en_AU.UTF-8
## tz Australia/Perth
## date 2025-05-03
## pandoc 3.6.4 @ /opt/homebrew/bin/pandoc
## quarto 1.7.29 @ /usr/local/bin/quarto
##
## ─ Packages ───────────────────────────────────────────────────────────────────
## ! package * version date (UTC) lib source
## askpass 1.2.1 2024-10-04 [1] CRAN (R 4.5.0)
## brio 1.1.5 2024-04-24 [1] CRAN (R 4.5.0)
## cachem 1.1.0 2024-05-16 [1] CRAN (R 4.5.0)
## callr 3.7.6 2024-03-25 [1] CRAN (R 4.5.0)
## cli 3.6.5 2025-04-23 [1] CRAN (R 4.5.0)
## codetools 0.2-20 2024-03-31 [2] CRAN (R 4.5.0)
## colorout 1.3-2 2025-04-24 [1] Github (jalvesaq/colorout@572ab10)
## commonmark 1.9.5 2025-03-17 [1] CRAN (R 4.5.0)
## countrycode * 1.6.1 2025-03-31 [1] CRAN (R 4.5.0)
## crayon 1.5.3 2024-06-20 [1] CRAN (R 4.5.0)
## credentials 2.0.2 2024-10-04 [1] CRAN (R 4.5.0)
## curl 6.2.2 2025-03-24 [1] CRAN (R 4.5.0)
## data.table * 1.17.0 2025-02-22 [1] CRAN (R 4.5.0)
## desc 1.4.3 2023-12-10 [1] CRAN (R 4.5.0)
## devtag 0.0.0.9000 2025-04-18 [1] Github (moodymudskipper/devtag@24f9b21)
## devtools 2.4.5 2022-10-11 [1] CRAN (R 4.5.0)
## diffobj 0.3.6 2025-04-21 [1] CRAN (R 4.5.0)
## digest 0.6.37 2024-08-19 [1] CRAN (R 4.5.0)
## ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.5.0)
## evaluate 1.0.3 2025-01-10 [1] CRAN (R 4.5.0)
## fansi 1.0.6 2023-12-08 [1] CRAN (R 4.5.0)
## fastmap 1.2.0 2024-05-15 [1] CRAN (R 4.5.0)
## fs 1.6.6 2025-04-12 [1] CRAN (R 4.5.0)
## glue 1.8.0 2024-09-30 [1] CRAN (R 4.5.0)
## VP GSODR * 4.1.3.9000 2024-10-16 [?] CRAN (R 4.5.0) (on disk 4.1.3)
## htmltools 0.5.8.1 2024-04-04 [1] CRAN (R 4.5.0)
## htmlwidgets 1.6.4 2023-12-06 [1] CRAN (R 4.5.0)
## httpuv 1.6.15 2024-03-26 [1] CRAN (R 4.5.0)
## jsonlite 2.0.0 2025-03-27 [1] CRAN (R 4.5.0)
## knitr * 1.50 2025-03-16 [1] CRAN (R 4.5.0)
## later 1.4.2 2025-04-08 [1] CRAN (R 4.5.0)
## lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.5.0)
## magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.5.0)
## memoise 2.0.1 2021-11-26 [1] CRAN (R 4.5.0)
## mime 0.13 2025-03-17 [1] CRAN (R 4.5.0)
## miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.5.0)
## nvimcom * 0.9.67 2025-04-12 [1] local
## openssl 2.3.2 2025-02-03 [1] CRAN (R 4.5.0)
## pillar 1.10.2 2025-04-05 [1] CRAN (R 4.5.0)
## pkgbuild 1.4.7 2025-03-24 [1] CRAN (R 4.5.0)
## pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.5.0)
## pkgload 1.4.0 2024-06-28 [1] CRAN (R 4.5.0)
## processx 3.8.6 2025-02-21 [1] CRAN (R 4.5.0)
## profvis 0.4.0 2024-09-20 [1] CRAN (R 4.5.0)
## promises 1.3.2 2024-11-28 [1] CRAN (R 4.5.0)
## ps 1.9.1 2025-04-12 [1] CRAN (R 4.5.0)
## purrr 1.0.4 2025-02-05 [1] CRAN (R 4.5.0)
## R.methodsS3 1.8.2 2022-06-13 [1] CRAN (R 4.5.0)
## R.oo 1.27.1 2025-05-02 [1] CRAN (R 4.5.0)
## R.utils 2.13.0 2025-02-24 [1] CRAN (R 4.5.0)
## R6 2.6.1 2025-02-15 [1] CRAN (R 4.5.0)
## Rcpp 1.0.14 2025-01-12 [1] CRAN (R 4.5.0)
## remotes 2.5.0.9000 2025-04-21 [1] Github (r-lib/remotes@bcd35d5)
## rlang 1.1.6 2025-04-11 [1] CRAN (R 4.5.0)
## roxygen2 7.3.2 2024-06-28 [1] CRAN (R 4.5.0)
## roxyglobals 1.0.0 2023-08-21 [1] CRAN (R 4.5.0)
## rprojroot 2.0.4 2023-11-05 [1] CRAN (R 4.5.0)
## rstudioapi 0.17.1 2024-10-22 [1] CRAN (R 4.5.0)
## sessioninfo * 1.2.3 2025-02-05 [1] CRAN (R 4.5.0)
## shiny 1.10.0 2024-12-14 [1] CRAN (R 4.5.0)
## stringi 1.8.7 2025-03-27 [1] CRAN (R 4.5.0)
## stringr 1.5.1 2023-11-14 [1] CRAN (R 4.5.0)
## sys 3.4.3 2024-10-04 [1] CRAN (R 4.5.0)
## testthat 3.2.3 2025-01-13 [1] CRAN (R 4.5.0)
## tibble 3.2.1 2023-03-20 [1] CRAN (R 4.5.0)
## urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.5.0)
## usethis 3.1.0 2024-11-26 [1] CRAN (R 4.5.0)
## vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.5.0)
## withr 3.0.2 2024-10-28 [1] CRAN (R 4.5.0)
## xfun 0.52 2025-04-02 [1] CRAN (R 4.5.0)
## xml2 1.3.8 2025-03-14 [1] CRAN (R 4.5.0)
## xtable 1.8-4 2019-04-21 [1] CRAN (R 4.5.0)
##
## [1] /Users/adamsparks/Library/R/arm64/4.5/library
## [2] /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library
##
## * ── Packages attached to the search path.
## V ── Loaded and on-disk version mismatch.
## P ── Loaded and on-disk path mismatch.
##
## ──────────────────────────────────────────────────────────────────────────────
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