epi_final_size: Calculate final epidemic size

In adamkucharski/SIRfinalsize: Calculates final size for SIR epidemic in heterogenous population

Calculate final epidemic size

Description

This function calculates final epidemic size using SIR model for heterogeneously mixing population

Usage

epi_final_size(r0 = 2, contact_matrix, demography_vector,
  prop_suscep = NULL)

Arguments

r0	Basic reproduction number. Default is 2
contact_matrix	Social contact matrix. Entry mm_ij gives average number of contacts in group i reported by participants in group j
demography_vector	Demography vector. Entry pp_i gives proportion of total population in group i (model will normalise if needed)
prop_suscep	Proportion of each group susceptible. Null assumption is fully susceptible

Examples

epi_final_size()

adamkucharski/SIRfinalsize documentation built on Jan. 6, 2023, 12:33 a.m.