Files in adibender/pammtools

Piece-Wise Exponential Additive Mixed Modeling Tools for Survival Analysis

LICENSE.md NEWS.md R/add-functions.R R/as-ped.R R/convenience-plots.R R/cumulative-coefficient.R R/cumulative-effect.R R/data.R R/formula-specials.R R/formula-utils.R R/geom-hazard.R R/get-cut-points.R R/get-terms.R R/ggplot-extensions.R R/helpers.R R/interval-information.R R/lag-lead-utils.R R/make-newdata.R R/model-evaluation.R R/multi-state-helpers.R R/nest-utils.R R/pammfit.R R/pammtools.R R/penalized-lag-lead.R R/predict.R R/rpexp.R R/sim-pexp.R R/split-data.R R/tdc-utils.R R/tidiers.R R/tidyverse-methods.R R/utils-pipe.R R/viz-elra.R R/warnings.R R/zzz.R README.Rmd README.md cran-comments.md data-raw/data-for-tests.R data-raw/hex-sticker.R data-raw/icu-patients.R data-raw/sim_elra.R data-raw/sofa-extubation.R data-raw/staph-recurrence.R data-raw/veteran-ped.R man/add_cif.Rd man/add_counterfactual_transitions.Rd man/add_hazard.Rd man/add_surv_prob.Rd man/add_tdc.Rd man/add_term.Rd man/add_trans_ci.Rd man/add_trans_prob.Rd man/as.data.frame.crps.Rd man/as_ped.Rd man/as_ped_cr.Rd man/calc_ci.Rd man/combine_df.Rd man/compute_cumu_diff.Rd man/cumulative_coefficient.Rd man/daily.Rd man/dplyr_verbs.Rd man/elra_matrix.Rd man/fcumu.Rd man/formula_helpers.Rd man/from_to_pairs.Rd man/geom_hazard.Rd man/geom_stepribbon.Rd man/get_cif.Rd man/get_cumu_eff.Rd man/get_cumu_hazard.Rd man/get_cumulative.Rd man/get_cut.Rd man/get_event_types.Rd man/get_hazard.Rd man/get_intervals.Rd man/get_laglead.Rd man/get_ped_form.Rd man/get_plotinfo.Rd man/get_sim_ci.Rd man/get_sim_cumu.Rd man/get_surv_prob.Rd man/get_tdc_form.Rd man/get_tdc_vars.Rd man/get_term.Rd man/get_terms.Rd man/gg_fixed.Rd man/gg_laglead.Rd man/gg_partial.Rd man/gg_re.Rd man/gg_slice.Rd man/gg_smooth.Rd man/gg_tensor.Rd man/has_tdc.Rd man/int_info.Rd man/make_X.Rd man/make_X.scam.Rd man/modus.Rd man/nest_tdc.Rd man/newdata.Rd man/nuclear.Rd man/pamm.Rd man/pammtools.Rd man/patient.Rd man/ped_info.Rd man/pipe.Rd man/predictSurvProb.pamm.Rd man/prep_concurrent.Rd man/rpexp.Rd man/sample_info.Rd man/seq_range.Rd man/sim_pexp.Rd man/sim_pexp_cr.Rd man/simdf_elra.Rd man/smooth.construct.fdl.smooth.spec.Rd man/specials.Rd man/split_data.Rd man/split_data_multistate.Rd man/staph.Rd man/tidiers.Rd man/tidy_fixed.Rd man/tidy_smooth.Rd man/tidy_smooth2d.Rd man/tumor.Rd man/warn_about_new_time_points.Rd man/warn_about_new_time_points.glm.Rd tests/testthat.R tests/testthat/test-add-functions.R tests/testthat/test-as-ped-cr.R tests/testthat/test-as-ped.R tests/testthat/test-cumulative-coefficients.R tests/testthat/test-cumulative-effect.R tests/testthat/test-formula-utils.R tests/testthat/test-interval-functions.R tests/testthat/test-mgcv-convenience.R tests/testthat/test-model-evaluation.R tests/testthat/test-newdata.R tests/testthat/test-pamm-fit.R tests/testthat/test-predict-functions.R tests/testthat/test-simple-transform.R tests/testthat/test-simulation.R tests/testthat/test-specials.R tests/testthat/test-tdc-transform.R tests/testthat/test-tidyverse-S3methods.R vignettes/baseline.Rmd vignettes/basics.Rmd vignettes/competing-risks.Rmd vignettes/convenience.Rmd vignettes/cumulative-effects.Rmd vignettes/data-transformation.Rmd vignettes/frailty.Rmd vignettes/left-truncation.Rmd vignettes/model-evaluation.Rmd vignettes/multi-state.Rmd vignettes/recurrent-events.Rmd vignettes/splines.Rmd vignettes/strata.Rmd vignettes/tdcovar.Rmd vignettes/tveffects.Rmd