In adw96/CatchAll: Species Richness Estimation with CatchAll

CatchAll is a package for species richness estimation and modelling. It is based off the original CatchAll software program by Bunge et. al, but now coded into R and updated to reflect new use cases.

At this point, only the Poisson model is available to use. Here is an example of its use

### Run the first two lines at home! ####
# install.packages("devtools")
# devtools::install_github("adw96/CatchAll")
library(devtools)
library(CatchAll)
library(magrittr)
devtools::install_github("adw96/breakaway")
library(breakaway)
set.seed(1)
counts <- rpois(5000, 2)
PoissonModel(counts, cutoff = 10)

Not too bad, given that the true richness is 5000!

Let's try another cutoff:

PoissonModel(counts)

Now run all models!

# suppressMessages({y <- CatchAll(counts)})
# head(y)

adw96/CatchAll documentation built on May 28, 2019, 3:55 p.m.