In adw96/antirarefaction: What goes wrong when you rarefy?

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knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-"
)

antirarefaction

Code accompanying my commentary "Rarefaction, alpha diversity, and statistics."

My plan is to turn this into a package that takes in a phyloseq object, and determines if you're more likely to suffer from Type 1 errors (too small p-values; increased risk of concluding a relationship that isn't reproducible) or Type 2 error (reduced ability to detect a true difference in environments).

Watch this space...

adw96/antirarefaction documentation built on May 7, 2019, 8:41 a.m.