TODO.md

In adw96/breakaway: Species Richness Estimation and Modeling

Amy's To Do List

Top priorities

• make betta a generic function
• betta.phyloseq that takes measures argument

• betta for original format

• make breakaway take phyloseq object; run on all at once

• make breakaway generic -- let take vector of abundances

Next top priorities

• write estimate class: target, estimate, std error, ci, other

• rewrite output of all estimators into this form

• Simplify breakaway output: estimate, std error, ci

• write estimate_richness_better -- to make phyloseq-like tools
• write plot_richness_better -- to make phyloseq-like tools
• write vignette
• pull request to incorporate breakaway into phyloseq
• betta should use ggplot

Other things to do

• streamline breakaway, nof1
• streamline OB fns

adw96/breakaway documentation built on Dec. 12, 2023, 2:19 a.m.