Description Usage Arguments Value Examples
clarkeGenesSigs: Extract gene sets as matrix or list from Clarke Suppl file
1 | clarkeGenesSigs(id = "Symbol", matrix = TRUE, convertNA = FALSE)
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id |
Character either with value "Symbol" or "Ensembl". Return signature as gene symbols or EnsEMBL gene identifers |
matrix |
logical, default TRUE, return matrix, if FALSE return list |
convertNA |
Logical. Default is FALSE Replace NA with 0 |
matrix or list with gene sets
1 2 | clarkeGenesSigs(id= "Symbol",matrix=TRUE)
clarkeGenesSigs(id= "Ensembl",matrix=FALSE)
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