calculate_cfu: Calculate the cfus based on the dilution factor and...

In aef1004/bactcountr: Back Calculate CFU's Based On Dilution Series

Description

Calculate the cfus based on the dilution factor and resuspended volume

Usage

calculate_cfu(
  df,
  dilution_factor,
  resuspend_volume_ml,
  volume_plated_uL,
  percent = 1,
  dilution_column = "dilution",
  CFU_column = "CFUs"
)

Arguments

df	dataframe that contains information on the cfu counts and corresponding dilutions
dilution_factor	the dilution factor used to perform dilutions (e.g., 5 fold dilutions)
resuspend_volume_ml	the volume that the organ is resuspended in mL (e.g., 0.5 mL)
volume_plated_uL	the volume that was plated onto the agar plate (e.g., 100 uL)
percent	percentage of the organ used to plate as a fraction/decimal, default is 1 (whole organ)
dilution_column	name of the dilution column in the input dataframe
CFU_column	name of the CFU column in the input dataframe

Value

df

Examples

calculate_cfu(CFU_one_dilution, 5, 0.5, 100, 0.5, "dilution", "CFUs")

aef1004/bactcountr documentation built on Oct. 22, 2021, 3:24 a.m.