rds: rds
In agorelick/rds: Root diversity score (RDS)
rds R Documentation
rds
Description
Main function to run RDS calculations on a cancer phylogeny (phylo object). Must use Naxerova Lab Normal/Primary/Metastasis tip label conventions.
Usage
rds(phy, drop_na = T, use_gmp = T)
Arguments
phy
A phylo-class cancer phylogeny
drop_na
Omit rows in the output data.frame with NA RDS values (detault=T)
use_gmp
Use gmp R package to calculate RDS for large trees. Required for trees with more around 30 tips (default=T)
Value
data.frame where rows are metastasis sample-types and columns are k, l, m, and RDS values.
agorelick/rds documentation built on May 31, 2024, 3:35 a.m.
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| rds | R Documentation |
rds
Description
Main function to run RDS calculations on a cancer phylogeny (phylo object). Must use Naxerova Lab Normal/Primary/Metastasis tip label conventions.
Usage
rds(phy, drop_na = T, use_gmp = T)
Arguments
phy |
A phylo-class cancer phylogeny |
drop_na |
Omit rows in the output data.frame with NA RDS values (detault=T) |
use_gmp |
Use gmp R package to calculate RDS for large trees. Required for trees with more around 30 tips (default=T) |
Value
data.frame where rows are metastasis sample-types and columns are k, l, m, and RDS values.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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