NEWS.md

In agugonrey/MOSS: Multi-Omic Integration via Sparse Singular Value Decomposition

version 0.2.2

Updates.

Manuscript accepted in Bioinformatics.

Bugs fixed.

-prepro_na: An error is displayed if any features contains more than 20% of missing data.

version 0.2.1

Bugs fixed.

-cov.adj: in this update cov.adj allows to have missing values in covariates. Also, when used outside of $moss$, the omic block to adjust can also contain missing values.

New function.

-moss_venn.

version 0.2.0

Extra features included in this version.

• Option to tune degrees of sparsity and tSNE maps in parallel.
• Option to adjust omic blocks for covariates effects.
• Option to select degrees of sparsity by 'liberal' or 'conservative' methods.
• Mean-Imputation of missing data.
• Summaries of features selected by omic block.
• Features signatures by cluster of subjects.
• Bi-cluster representations using 'ComplexHeatmap'.

New functions.

• moss_select.
• moss_signatures.
• moss_heatmap.
• cov_adj.

agugonrey/MOSS documentation built on Feb. 17, 2024, 3:21 a.m.