plot.spatialTest: Plot results of the local spatial permutation test of summed...

In ahb108/rcarbon: Calibration and Analysis of Radiocarbon Dates

Plot results of the local spatial permutation test of summed probability distributions.

Description

Displays local growth rates, p-values, and q-values retrieved from a spatialTest class object.

Usage

## S3 method for class 'spatialTest'
plot(
  x,
  index = 1,
  option,
  breakRange,
  breakLength = 7,
  rd = 5,
  baseSize = 0.5,
  plim = 0.05,
  qlim = 0.05,
  legend = FALSE,
  legSize = 1,
  location = "bottomright",
  ...
)

Arguments

x	A spatialTest class object
index	A numerical value indicating which transition to display. Ignored when option="rawlegend" or option="testlegend". Default is 1.
option	Either "raw" to display local growth rates, "test" to display the test results (i.e. q and p values), or "return" to return a sf class object containing all relevant information for the given index value.
breakRange	A vector of length 2 defining the minimum and maximum values of growth rate to be displayed in the legend. If set to NA its computed from data range (default).
breakLength	A numerical vector defining the number of breaks for growth rates to be displayed in the legend.
rd	Number of decimal places of the growth rate to be displayed in the Legend
baseSize	Numerical value giving the amount by which points should be magnified relative to the default settings in R. Default is 0.5
plim	Threshold value for the p-values. Default is 0.05.
qlim	Threshold value for the q-values. Default is 0.05.
legend	Logical values specifying whether the legend should be displayed or not. Default is FALSE.
legSize	Numerical value giving the amount by which points should be magnified relative to the default settings in R for the Legend. Default is 1.
location	A single keyword from the list "bottomright", "bottom", "bottomleft", "left", "topleft", "top", "topright", "right" and "center" to specify the location of the Legend. Default is "bottomright".
...	Graphical parameters to be passed to methods.

Details

The function displays a distribution map of local growth rates (when option="raw"), q- and p-values (when option="test"), and the associated legends (when option="rawlegend" or option="testlegend").

See Also

sptest

ahb108/rcarbon documentation built on Aug. 29, 2023, 9:21 a.m.