ahonkela/tigre
Transcription factor Inference through Gaussian process Reconstruction of Expression

Package index
Search the ahonkela/tigre package
Functions
296
Source code
22
Man pages
27
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ahonkela/tigre: Transcription factor Inference through Gaussian process Reconstruction of Expression
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API

API for ahonkela/tigre
Transcription factor Inference through Gaussian process Reconstruction of Expression

Global functions
.addAliases Source code
.addAndGetAliasId Source code
.addAndGetDatasetId Source code
.addAndGetExperimentId Source code
.addAndGetExperimentSetId Source code
.addAndGetFigureId Source code
.addAndGetProbeGeneIds Source code
.addAndGetRegulatorId Source code
.addAndGetSupplementaryDataId Source code
.addExperimentSetExperiments Source code
.addFigures Source code
.addGeneAliases Source code
.addResults Source code
.addSupplementaryData Source code
.addTargetSet Source code
.addZscores Source code
.baselineLogLikeGradient Source code
.baselineLogLikelihood Source code
.baselineOptimise Source code
.createTables Source code
.distfit Source code
.distfit_obj Source code
.filterTargets Source code
.formModel Source code
.getLoopVariables Source code
.getProbeGeneId Source code
.getProcessedData Source code
.getVersion Source code
.gpsimKernelSpec Source code
.gradLnDiffErfs Source code
.listSelectSomeIndex Source code
.multiKernCacheBlock Source code
.openConnection Source code
CGoptim Man page
ExpressionTimeSeries Man page
ExpressionTimeSeries-class Man page
GPLearn Man page Source code
GPModel Man page
GPModel-class Man page
GPPlot Man page Source code
GPRankTFs Man page Source code
GPRankTargets Man page Source code
SCGoptim Man page
TF Man page
TF,scoreList-method Man page
TF<- Man page
TF<-,scoreList,character-method Man page
[,scoreList,ANY-method Man page
[,scoreList-method Man page
baseloglikelihoods Man page
baseloglikelihoods,scoreList-method Man page
baseloglikelihoods<- Man page
baseloglikelihoods<-,scoreList,numeric-method Man page
boundedTransform Man page
c,scoreList-method Man page
cgpdisimExpandParam Man page
cgpdisimExtractParam Man page
cgpdisimGradient Man page
cgpdisimLogLikeGradients Man page
cgpdisimLogLikelihood Man page
cgpdisimObjective Man page
cgpdisimUpdateProcesses Man page
cgpsimExpandParam Man page
cgpsimExtractParam Man page
cgpsimGradient Man page
cgpsimLogLikeGradients Man page
cgpsimLogLikelihood Man page
cgpsimObjective Man page
cgpsimOptimise Man page
cgpsimUpdateProcesses Man page
cmpndKernCompute Man page
cmpndKernDiagCompute Man page
cmpndKernDiagGradX Man page
cmpndKernDisplay Man page
cmpndKernExpandParam Man page
cmpndKernExtractParam Man page
cmpndKernGradX Man page
cmpndKernGradient Man page
cmpndKernParamInit Man page
datasetName Man page
datasetName,scoreList-method Man page
datasetName<- Man page
datasetName<-,scoreList,character-method Man page
disimKernCompute Man page
disimKernDiagCompute Man page
disimKernDisplay Man page
disimKernExpandParam Man page
disimKernExtractParam Man page
disimKernGradient Man page
disimKernParamInit Man page
disimXdisimKernCompute Man page
disimXdisimKernGradient Man page
disimXrbfKernCompute Man page
disimXrbfKernGradient Man page
disimXsimKernCompute Man page
disimXsimKernGradient Man page
drosophila_gpsim_fragment Man page
drosophila_mmgmos_fragment Man page
expTransform Man page
experimentSet Man page
experimentSet,scoreList-method Man page
experimentSet<- Man page
experimentSet<-,scoreList,character-method Man page
export.scores Man page Source code
gammaPriorExpandParam Man page Source code
gammaPriorExtractParam Man page Source code
gammaPriorGradient Man page Source code
gammaPriorLogProb Man page Source code
gammaPriorParamInit Man page Source code
generateModels Man page Source code
genes Man page
genes,scoreList-method Man page
genes<- Man page
genes<-,scoreList,list-method Man page
gpdisimCreate Man page Source code
gpdisimDisplay Man page Source code
gpdisimExpandParam Man page
gpdisimExtractParam Man page
gpdisimGradient Man page
gpdisimLogLikeGradients Man page
gpdisimLogLikelihood Man page
gpdisimObjective Man page
gpdisimUpdateProcesses Man page
gpsimCreate Man page Source code
gpsimDisplay Man page Source code
gpsimExpandParam Man page
gpsimExtractParam Man page
gpsimGradient Man page
gpsimLogLikeGradients Man page
gpsimLogLikelihood Man page
gpsimObjective Man page
gpsimUpdateProcesses Man page
initialize,ExpressionTimeSeries-method Man page
initialize,GPModel-method Man page
invgammaPriorExpandParam Man page Source code
invgammaPriorExtractParam Man page Source code
invgammaPriorGradient Man page Source code
invgammaPriorLogProb Man page Source code
invgammaPriorParamInit Man page Source code
is.GPModel Man page Source code
is.GPModel,GPModel-method Man page
kernCompute Man page
kernCreate Man page Source code
kernDiagCompute Man page
kernDiagGradX Man page
kernDisplay Man page
kernExpandParam Man page
kernExtractParam Man page
kernGradX Man page
kernGradient Man page
kernParamInit Man page
kernPriorGradient Man page
kernPriorLogProb Man page
knownTargets Man page
knownTargets,scoreList-method Man page
knownTargets<- Man page
knownTargets<-,scoreList,character-method Man page
length,scoreList-method Man page
lnDiffErfs Man page Source code
loglikelihoods Man page
loglikelihoods,scoreList-method Man page
loglikelihoods<- Man page
loglikelihoods<-,scoreList,numeric-method Man page
mlpKernCompute Man page
mlpKernDiagGradX Man page
mlpKernDisplay Man page
mlpKernExpandParam Man page
mlpKernExtractParam Man page
mlpKernGradX Man page
mlpKernGradient Man page
mlpKernParamInit Man page
modelArgs Man page
modelArgs,scoreList-method Man page
modelArgs<- Man page
modelArgs<-,scoreList,list-method Man page
modelDisplay Man page Source code
modelExpandParam Man page
modelExtractParam Man page
modelGradient Man page
modelLogLikelihood Man page
modelObjective Man page
modelOptimise Man page
modelStruct Man page
modelStruct,GPModel-method Man page
modelStruct<- Man page
modelStruct<-,GPModel,list-method Man page
modelTieParam Man page
modelType Man page
modelType,GPModel-method Man page
modelUpdateProcesses Man page
multiKernCompute Man page
multiKernDiagCompute Man page
multiKernDisplay Man page
multiKernExpandParam Man page
multiKernExtractParam Man page
multiKernGradient Man page
multiKernParamInit Man page
optimiDefaultConstraint Man page
optimiDefaultOptions Man page Source code
params Man page
params,scoreList-method Man page
params<- Man page
params<-,scoreList,list-method Man page
plotTimeseries Man page Source code
priorCreate Man page Source code
priorExpandParam Man page
priorExtractParam Man page
priorGradient Man page Source code
priorLogProb Man page Source code
priorParamInit Man page Source code
processData Man page Source code
processRawData Man page Source code
rbfKernCompute Man page
rbfKernDiagCompute Man page
rbfKernDisplay Man page
rbfKernExpandParam Man page
rbfKernExtractParam Man page
rbfKernGradient Man page
rbfKernParamInit Man page
scoreList Man page
scoreList-class Man page
sharedModel Man page
sharedModel,scoreList-method Man page
sharedModel<- Man page
sharedModel<-,scoreList,list-method Man page
show,GPModel-method Man page
show,scoreList-method Man page
sigmoidTransform Man page
simKernCompute Man page
simKernDiagCompute Man page
simKernDisplay Man page
simKernExpandParam Man page
simKernExtractParam Man page
simKernGradient Man page
simKernParamInit Man page
simXrbfKernCompute Man page
simXrbfKernGradient Man page
simXsimKernCompute Man page
simXsimKernGradient Man page
sort,scoreList-method Man page
tigre Man page
tigre-package Man page
translateKernCompute Man page
translateKernDiagCompute Man page
translateKernDisplay Man page
translateKernExpandParam Man page
translateKernExtractParam Man page
translateKernGradient Man page
translateKernParamInit Man page
var.exprs Man page
var.exprs,ExpressionTimeSeries-method Man page
var.exprs<- Man page
var.exprs<-,ExpressionTimeSeries-method Man page
whiteKernCompute Man page
whiteKernDiagCompute Man page
whiteKernDisplay Man page
whiteKernExpandParam Man page
whiteKernExtractParam Man page
whiteKernGradient Man page
whiteKernParamInit Man page
whiteXwhiteKernCompute Man page
whiteXwhiteKernGradient Man page
write.scores Man page
write.scores,scoreList-method Man page
ahonkela/tigre documentation built on Aug. 6, 2021, 12:08 p.m.

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