Man pages for ahonkela/tigre
Transcription factor Inference through Gaussian process Reconstruction of Expression
| drosophila_gpsim_fragment | Fragment of 12 time point Drosophila embryonic development... |
| drosophila_mmgmos_fragment | Fragment of 12 time point Drosophila embryonic development... |
| export | Export results to an SQLite database |
| ExpressionTimeSeries-class | Class to contain time series expression assays |
| expTransform | Constrains a parameter. |
| generateModels | Generating models with the given data |
| GPLearn | Fit a GP model |
| GPModel-class | A container for gpsim models |
| GPPlot | Plot GP(DI)SIM models |
| GPRankTargets | Ranking possible target genes or regulators |
| gpsimCreate | Create a GPSIM/GPDISIM model. |
| kernCompute | Compute the kernel given the parameters and X. |
| kernCreate | Initialise a kernel structure. |
| kernDiagGradX | Compute the gradient of the kernel wrt X. |
| kernGradient | Compute the gradient wrt the kernel parameters. |
| lnDiffErfs | Helper function for computing the log of difference |
| modelDisplay | Display a model. |
| modelExpandParam | Update a model structure with new parameters or update the... |
| modelExtractParam | Extract the parameters of a model. |
| modelGradient | Model log-likelihood/objective error function and its... |
| modelTieParam | Tie parameters of a model together. |
| optimiDefaultConstraint | Returns function for parameter constraint. |
| plotTimeseries | Plot ExpressionTimeSeries data |
| processData | Processing expression time series |
| SCGoptim | Optimise the given function using (scaled) conjugate... |
| scoreList-class | Class "scoreList" |
| tigre-package | tigre - Transcription factor Inference through Gaussian... |
