Man pages for ailich/mytools
Stuff
| AFOV_Area_Habtable | Calculates area per habitat frame |
| avg_density | Calculates Average Fish Density and bootstrap confidence... |
| bin_cvision | Collapses merged C-vision csv to time bins |
| broken_stick | Returns Eigenvalues expected by random data |
| calc_AFOV | Calculates the Angular Field of View |
| calc_bearing | Calculates bearing between points |
| calc_dens | Helper function to calculate fish densities |
| calc_dist | Calculates distance CBASS has traveled |
| calc_entropy | Calculates Shannon entropy of a raster stack of class... |
| calc_fps | Calculates frame-rate of Blackfly Camera |
| calc_layback | Calculates layback of CBASS |
| calc_width | Calculates width of video frame |
| check_camera_drift | Generates diagnostic table assessing drift of HD CBASS... |
| check_camera_table | QC for camera table |
| check_cvision | Check if any C-Vision csv's are missing |
| check_if_reset | Checks if camera has been restarted during transect |
| check_jumbled | Check if camera table is jumbled |
| check_pattern | Checks if camera table has more than one pattern |
| collapse_bins | Collapse Percent Cover Bins to a new specified range |
| combine_rasters | Combines multiple rasters into one |
| connect_CBASS_db | Connect to a CBASS database |
| const_hab | Extract More Constant Habitat Areas |
| cscore | Calculates normalized pairwise checkerboard C-scores |
| cvision_to_timeseries | Function to convertmerged_cvision_csv to fish time-series for... |
| degrees | Converts a measurement in radians to degrees |
| detect_cam_pattern | Function for detecting string type in camera table |
| extract_window | Extracts relevant window from raster based on position of... |
| fish_to_timeseries | Helper function to convert merged_merged_cvision_csv to fish... |
| generate_cruise_files | Generates Cruise Files and diagnostic plots |
| get_blackfly_timestamp_from_vidtime | Returns Blackfly Timestamp based on Video Number and Seconds... |
| getCBASSdbNames | Returns names of CBASS databases |
| get_HypackPos | Get ship position from Hypack log |
| get_HypackSpeed | Get speed from Hypack log |
| get_payout | Gets Payout data in single table from winch data folder |
| get_total_frame | Calculates Total Frame Number |
| import_db_table | Load database table into memory as dataframe (tibble) |
| interp | Interpolate Ship Position |
| make_crs | Makes a proj4 string based on EPSG code or name of common... |
| match_cvision_fish2hab | Matches fish recorded in C-Vision to closest habitat frame |
| max_relief | Get Maximum Relief |
| merge_cvision_csv | Merge C-Vision CSV's |
| nearest_time | Match to nearest time |
| NorthstarGGA2EK | Reformat postion from Northstar-941X-GGA.lab files to look... |
| n_vert | Counts number of vertices in a spatial object |
| order_bins | Order Percent Cover Bins and gives their corresponding... |
| order_bins2 | Order Percent Cover Bins, gives their corresponding... |
| outline_raster | Outlines non-na values of a raster |
| parse_video_fps | Gets frames per second from video info |
| parse_video_time | Gets duration from video info |
| PCC | Computes p-value of accuracy of a classifer according to the... |
| perprim2perhard | Percent Primary to Percent Hardbottom |
| radians | Converts a measurement in degrees to radians |
| read_hypack | Reads RAW Hypack files |
| read_hypack_helper | helper function for read_hypack |
| reproject_align_raster | Reprojects/resamples and aligns a raster |
| rPCA_cum_exp | Cumulative Variation Explained Raster PCA |
| rPCA_prop_exp | Proportion of Variation Explained by each layer in a Raster... |
| sort_species | Sort Species List |
| TASSE | Calculates TASSE terrain attributes with 3x3 window |
| TASSE_AWA | Calculates TASSE terrain attributes with various window sizes |
| train_val | Split Habitat Data into training and Validation Data |
| video_info | Gets video details |
| writeRaster2 | Modification of writeRaster that can delete auxillary files |
