Estimation of Non-Linear Outcomes of Infectious Disease Outbreaks using Generalized Additive Modeling with Penalized Basis Splines

check.scalars | Assess whether scalar estimates fall within their intended... |

confints.outcomes | Calculate confidence intervals of model outcome variables |

eval.model | Eval model prediction with given model params at given... |

observed.results.scalars | Run simulation study on one set of observations |

pspline.confints.scalars | Calculates confidence intervals and medians for scalar... |

pspline.confints.timeseries | Calculates confidence intervals for results of simulation... |

pspline.estimate.scalars | Calculates confidence intervals for scalars estimated from... |

pspline.estimate.timeseries | Calculates confidence intervals for time series sampled from... |

pspline.inference | Inference using penalized basis splines (P-splines) in a... |

pspline.outbreak.calc.cumcases | Calculate cumulative incidence time series from incidence... |

pspline.outbreak.cases | Calculate cumulative incidence for an outbreak |

pspline.outbreak.cumcases | Calculate cumulative incidence for an outbreak |

pspline.outbreak.cumcases.relative | Calculate relative incidence for an outbreak |

pspline.outbreak.thresholds | Calculate outbreak thresholds for an outbreak |

pspline.sample.scalars | Runs simulations on an outbreak GAM/GAMM for the purpose of... |

pspline.sample.timeseries | Runs simulations on an outbreak GAM/GAMM for the purpose of... |

pspline.validate.scalars | Run a simulation study to validate a scalar estimator |

quantile.outcomes | Calculate quantiles of model outcome variables |

sample.params | Sample spline parameters |

truth.results.scalars | Run simulation study on one truth |

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