multimodal_sPLS_wrapper: MuliModalSparsePLS(DA)

In ajabadi/BIRSBIO2020.scNMTseq.PLS: scNMTseq challenge analysis using a PLS approach

Description

MuliModalSparsePLS(DA)

Usage

multimodal_sPLS_wrapper(
  mae,
  study_assays,
  lineages = NULL,
  stages = NULL,
  ncomp = 2,
  scale = TRUE,
  design = "null",
  DA = NULL,
  keepX = NULL,
  save = TRUE
)

Arguments

mae	A MultiAssayExperiment object
study_assays	study assays. first must be 'rna' for unsupervised analysis
lineages	Character, lineages to keep, from unique(colData(mae)$lineage10x_2)
stages	Character, stages to keep, from unique(colData(mae)$stage)
ncomp	Integer, number of components
scale	Logical, whether to scale the features
DA	NULL for unsupervised, or from names(colData(mae)) for supervised (PLSDA)

ajabadi/BIRSBIO2020.scNMTseq.PLS documentation built on May 24, 2021, 4:19 p.m.