getGenBankSeqs: Download sequences and metadata from GenBank by unique...
In ajrominger/abbaGapR: Amplicon-based biodiversity assesment gap analysis in R
Description
Usage
Arguments
Value
Description
Download sequences and metadata from GenBank by unique identifier
Usage
1
getGenBankSeqs(id)
Arguments
id
character vector of unique ID(s) for records in database
Value
a list with two elements: data contains the metadata for each
sequence; and dna contains a character vector (same length as number
of rows of data) where each element is a FASTA-formatted DNA sequence
matched to the metadata by accession.version number
@examples
## Not run:
foo <- getGenBankSeqs(c('1331395866', '1679378317'))
## End(Not run)
ajrominger/abbaGapR documentation built on Dec. 18, 2021, 11:29 p.m.
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Description Usage Arguments Value
Description
Download sequences and metadata from GenBank by unique identifier
Usage
1 | getGenBankSeqs(id)
|
Arguments
id |
character vector of unique ID(s) for records in database |
Value
a list with two elements: data contains the metadata for each
sequence; and dna contains a character vector (same length as number
of rows of data) where each element is a FASTA-formatted DNA sequence
matched to the metadata by accession.version number
@examples ## Not run: foo <- getGenBankSeqs(c('1331395866', '1679378317')) ## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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