prettyOrder: Pretty ordering of clades for plotting
In ajrominger/socorro: Helper functions for R
Description
Usage
Arguments
Details
Author(s)
See Also
Examples
Description
Orders clades according to number of decendants for plotting purposes
Usage
1
prettyOrder(phy)
Arguments
phy
a phylogenetic tree (class phylo) to be re-ordered
Details
This function function will re-order a phylogeny such that clades with the fewest
decendents will be plotted ‘before’ (above or to the left of) clades with more decendents.
This works recursively from the root.
Author(s)
Andy Rominger <ajrominger@gmail.com>
See Also
ape::rotate
Examples
1
2
3
tre <- ape::rtree(10)
tre <- prettyOrder(tre)
ape::plot.phylo(tre)
ajrominger/socorro documentation built on Jan. 3, 2020, 6:25 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Author(s) See Also Examples
Description
Orders clades according to number of decendants for plotting purposes
Usage
1 | prettyOrder(phy)
|
Arguments
phy |
a phylogenetic tree (class |
Details
This function function will re-order a phylogeny such that clades with the fewest decendents will be plotted ‘before’ (above or to the left of) clades with more decendents. This works recursively from the root.
Author(s)
Andy Rominger <ajrominger@gmail.com>
See Also
ape::rotate
Examples
1 2 3 | tre <- ape::rtree(10)
tre <- prettyOrder(tre)
ape::plot.phylo(tre)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.