getExperimentSamplesIntermediateData-deprecated: getExperimentSamplesIntermediateData - Gets intermediate data...

In ajwtech/pfsrsdk: Functions for interacting with Platform for Science APIs

Description

getExperimentSamplesIntermediateData Gets raw data for a experiment sample identified by barcode.

Arguments

coreApi	coreApi object with valid jsessionid
experimentType	experiment type for sample
experimentAssayType	assay type for sample
experimentSampleBarcode	experiment sample barcode of entity to get
intermediateDataName	assay intermediate data name to retrive as configured in the assay.
useVerbose	TRUE or FALSE to indicate if verbose options should be used in http call

Details

getExperimentSamplesIntermediateData Gets intermediate data for a experiment sample identified by barcode.

Value

returns a list $entity contains data frame with derived experiment sample barcodes concentration, and assay raw data. $response contains the entire http response

Author(s)

Craig Parman ngsAnalytics, ngsanalytics.com

Natasha Mora [e-mail]

See Also

pfsrsdk-deprecated

Examples

## Not run: 
api <- coreAPI("PATH TO JSON FILE")
login <- authBasic(api)
response <- getExperimentSamplesIntermediateData(
  login$coreApi,
  "experimentType",
  "experimentAssayType",
  "intermediateDataName",
  "experimentSampleBarcode"
)
rawdata <- response$entity
logOut(login$coreApi)

## End(Not run)

ajwtech/pfsrsdk documentation built on June 14, 2019, 10:34 a.m.