tablecompet: tablecompet

In akashpawarstat/progcomprisk: Performs Cox PH on survival and competing events. Returns list and data set for DEGs contributing for survival and competing events (progcomprisk)

Description

'tablecompet' function from 'progcomprisk' package enables user to input a data and calculate the proportions of types of status in column 'Status'.

Usage

tablecompet(data)

Arguments

data	Data frame consisting survival events such, 'Id', 'OS', 'PFS', 'Death', 'Prog'.

Details

'tablecompet(data) adds a new column 'Status' to the input dataset and assigns status 0, 1, 2 to each cell. It assigns 0 when progression is 1, death is 0 or progression 0 death is 0, assigns 1 when progression is 1 and death is 1, whereas assigns 2 when progression is 0 and death is 1.

Concern should be given to rename the columns of the input data before using 'progcomprisk' package, as follows.

1) Subject Id column should be named as 'Id'.

2) OS column must be named as 'OS' .

3) Death status/event column should be named as 'Death'.

4) PFS column should be named as 'PFS'.

5) Progression event column should be named as 'Prog'.

Examples

tablecompet(user_data)

akashpawarstat/progcomprisk documentation built on Jan. 2, 2021, 12:33 a.m.