Man pages for alesssia/timesaveR
Widely used function to save time on everyday work
| biomart.fetch.GENE.grch37.mart | Uses biomaRt function to fetch the Ensembl Gene DB |
| biomart.fetch.SNP.grch37.mart | Uses biomaRt function to fetch the Ensembl SNP DB |
| biomart.gene.in.window | Fetches the HUGO gene symbols in the spefified window |
| biomart.gene.position | Fetches the chromosomal coordinates of the specified gene |
| biomart.SNPid.in.window | Fetches the reference SNP IDs in the spefified window |
| biomart.SNP.position | Fetches the chromosomal coordinates of the specified SNP IDs |
| biomart.SNP.rsID | Fetches the rs SNP IDs given the chromosomal coordinates and... |
| estimate.heritability | Estimates ACE, AE, CE, and E heritability models |
| estimate.meff | Estimates the effective number of tests |
| genomic.inflation.factor | Evalutes the genomic inflation factor (lambda) |
| get.age | Evaluates age difference between dates |
| get.timeframe | Evaluates day, week, month, and age differences between dates |
| GWAS.catalog.SNP | Fetches associations in the GWAS Catalog involving the given... |
| GWAS.catalog.SNP.proxy | Fetches associations in the GWAS Catalog involving the gived... |
| inverse.normal | Performs the inverse normal transformation |
| LDpair | Fetches LD (r2) between two SNPs |
| LDproxy | Fetches all SNPs in LD with a given SNP |
| LDtrait | Fetches all SNPs in LD with a given SNP |
| likelihood.ratio.test | Evaluates likelihood ratio test Compares the goodness of fit... |
| remove.outliers | Sets outliers to NA |
| to.chisq | Transform statistical distribition to chi-squared values |
