listCPB: Codon pair bias reference tables

In alex-sbu/CPBias: Codon pair bias calculation and gene design.

Description

Table of species specific CPB reference tables and information about the sequences used to create them.

Format

Species

Species scientific name.

EMBL.ID

EMBL WGS project ID number.

Taxonomy

Species lineage.

Number.of.Sequences

Number of sequences used in CPB calculation.

CPB.reference

Name of R object containing the CPB reference table.

Details

Sequences were collected for those organisms which have whole genome sequence data available in the EMBL database (ENA Release 121). Only protein coding sequences were used, mitochondrion and chloroplast sequences were omitted.

Note

Only the Homo.sapiens and Aedes.aegypti CPB reference table data sets are included in this package, the rest of the references listed can be downloaded at https://github.com/zayets as rda files and loaded directly in R.

Source

http://www.ebi.ac.uk/ena

Examples

# write to CSV
data(listCPB)
write.csv(listCPB, 'listCPB.csv', row.names=FALSE)

alex-sbu/CPBias documentation built on May 11, 2019, 11:24 p.m.