RandomComparePheno: RandomComparePheno

In alexcis95/PhenoExamWeb: Compare the likeness of phenotypes terms between groups of genes

Description

This function measures statistically significant phenotype similarities between gene sets and detects significant differential phenotypes for them.

Usage

RandomComparePheno(
  geneset,
  genesetcompare,
  organism = "human",
  database = "HPO",
  p.value = 0.05,
  nulltestnumber = 100,
  seed = 1,
  conditional_case = F,
  url = F
)

Arguments

geneset	A vector with genes symbol.
genesetcompare	A vector with gene symbol.
organism	A string paramater: "human" if you have human genes and "mouse" if you have mouse genes
database	A string paramater with different options. You can define a vector with the databases.
p.value	Cut of p value as they are relevant terms
nulltestnumber	A number of random genes subset.
seed	A seed.
url	A logical paramater. T if you want interactive links

Details

This function has developed by Alejandro Cisterna García as part of his PhD mentored by Juan Antonio Botía Blaya

alexcis95/PhenoExamWeb documentation built on April 24, 2021, 3:07 p.m.