getSharedP: Extract p-values from a list of VEGAS objects
In alexploner/VEGAStools: Basic manipulations of VEGAS gene lists
Description
Usage
Arguments
Value
See Also
Description
This function takes the output from and
returns a matrix of p-values
Usage
1
getSharedP(x, co = 1, min_cnt = 2, adjusted = FALSE)
Arguments
x
A list returned by intersectVEGAS
co
Upper cutoff for p-values to be included
min_cnt
Minimum number of VEGAS data sets that have to have
a p-value smaller or equal to co for a gene to be included
adjusted
Logical flag indicating whether to return adjusted
p-values or unadjusted ones (default).
Value
A matrix of p-values, possibly empty
See Also
alexploner/VEGAStools documentation built on May 10, 2019, 8:57 a.m.
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Description Usage Arguments Value See Also
Description
This function takes the output from and returns a matrix of p-values
Usage
1 | getSharedP(x, co = 1, min_cnt = 2, adjusted = FALSE)
|
Arguments
x |
A list returned by |
co |
Upper cutoff for p-values to be included |
min_cnt |
Minimum number of VEGAS data sets that have to have
a p-value smaller or equal to |
adjusted |
Logical flag indicating whether to return adjusted p-values or unadjusted ones (default). |
Value
A matrix of p-values, possibly empty
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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