Man pages for alexsanchezpla/goProfiles
goProfiles: an R package for the statistical analysis of functional profiles
| basicProfile | Builds basic functional profile |
| CD4ids | Entrez identifiers for CD4-TCells example |
| clustKidneyMF2 | Ready 2 cluster equivalence distance matrix obtained from the... |
| compareGeneLists | Compares two lists of genes by building (expanded) profiles... |
| compareGOProfiles | Comparison of lists of genes through their functional... |
| compareProfilesLists | Compares two of expanded profiles |
| compSummary | This function returns a brief summary of the comparison... |
| contractedProfile | Converts an expanded GO profile into a basic (contracted) GO... |
| conversionFunctions | Functions to transformconvert objects between different types |
| drosophila | Entrez identifiers for genes related with an eye mutation in... |
| equivalentGOProfiles | Are two lists of genes equivalent in terms of their Gene... |
| equivClust | For a given level (2, 3, ...) in a GO ontology (BP, MF or... |
| equivClust2pdf | Save the graphical representation of objects of class... |
| equivSummary | This function returns a brief summary of the equivalence test... |
| expandedLevel | Function to create expanded levels which can contain GO Terms... |
| expandedProfile | Builds expanded profiles |
| fisherGOProfiles | GO Class-by-class Fisher tests in lists of genes... |
| fitGOProfile | Does a "sample" GO profile 'pn', observed in a sample of 'n'... |
| goProfiles-package | Performs Gene Ontology based analysis using Functional... |
| GOTermsList | Functions to create and manage lists of GO terms associated... |
| hugoIds | Entrez Identifiers obtained from the Human Genome... |
| iterEquivClust | For each combination of the specified levels in the choosen... |
| kidneyGeneLists | Gene-lists related to kidney transplantation rejection |
| mergeProfilesLists | Combines two lists of profiles into one |
| ngenes | Returns the number of genes that lead to this GO profile (an... |
| omimIds | Entrez identifiers for disease-related genes in the OMIM... |
| plotProfiles | Plot functional profiles |
| printProfiles | Print functional profiles |
| prostateIds | Prostate cancer-related genes |
