Description Details Citation Author(s)
Complex niche models show low performance in identifying the most important range-limiting environmental variables and in transferring habitat suitability to novel environmental conditions (Warren and Seifert, 2011 <DOI:10.1890/10-1171.1>; Warren et al., 2014 <DOI:10.1111/ddi.12160>). This package helps to identify the most important set of uncorrelated variables and to fine-tune Maxent's regularization multiplier. In combination, this allows to constrain complexity and increase performance of Maxent niche models (assessed by information criteria, such as AICc (Akaike, 1974 <DOI:10.1109/TAC.1974.1100705>), and by the area under the receiver operating characteristic (AUC) (Fielding and Bell, 1997 <DOI:10.1017/S0376892997000088>). Users of this package should be familiar with Maxent niche modelling.
Package: | MaxentVariableSelection |
Type: | Package |
Version: | 1.0-3 |
Date: | 2018-01-23 |
Depends: | R (>= 3.1.2) |
Imports: | ggplot2, raster |
Suggests: | knitr, rmarkdown |
VignetteBuilder: | knitr |
License: | GPL (>= 2) |
Literature: | Akaike H (1974) |
A new look at the statistical model identification | |
IEEE Transactions on Automatic Control 19:6 716--723. | |
Fielding AH and Bell JF (1997) | |
A review of methods for the assessment of prediction | |
errors in conservation presence/absence models | |
Environmental Conservation 24:1 38--49. | |
Jimenez-Valverde A (2012) | |
Insights into the area under the receiver operating characteristic curve | |
(AUC) as a discrimination measure in species distribution modelling | |
Global Ecology and Biogeography 21:4 498--507. | |
Tyberghein L, Verbruggen H, Pauly K, Troupin C, Mineur F and De Clerck, O (2012) | |
Bio-ORACLE: a global environmental dataset for marine species distribution modelling | |
Global Ecology and Biogeography 21:2 272--281. | |
Warren DL, Glor RE, and Turelli M (2010) | |
ENMTools: a toolbox for comparative studies of environmental niche | |
models | |
Ecography 33:3 607--611. | |
Warren DL and Seifert SN (2011) | |
Ecological niche modeling in Maxent: the importance of model | |
complexity and the performance of model selection criteria | |
Ecological Applications 21:2 335--342. | |
To cite the package 'MaxentVariableSelection' in publications use:
Jueterbock A, Smolina I, Coyer JA and Hoarau, G (2016)
The fate of the Arctic seaweed Fucus distichus under climate change:
an ecological niche modelling approach
Ecology and Evolution 6(6), 1712-1724
Alexander Jueterbock
Maintainer: Alexander Jueterbock, <Alexander-Jueterbock@web.de>
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.