R/data.R

#' Example mutations data to use with ctDNAtools package
#'
#' Includes 10 mutations in chr14 immunoglobulin region.
#'
#'
#' @format A data frame with 10 rows and 5 columns:
#' \describe{
#'   \item{CHROM}{chromosome}
#'   \item{POS}{genomic position}
#'   \item{REF}{Reference allele}
#'   \item{ALT}{Alternative allele}
#'   \item{PHASING}{Common ID for mutations in phase}
#' }
#' @source In-house
"mutations"

#' Example Genomic targets to use with ctDNAtools package
#'
#' Includes 1 target region in chr14.
#'
#'
#' @format A data frame with 1 row and 3 columns:
#' \describe{
#'   \item{chr}{chromosome}
#'   \item{start}{start genomic position}
#'   \item{end}{end genomic position}
#' }
#' @source In-house
"targets"
alkodsi/ctDNAtools documentation built on Feb. 22, 2022, 9:40 a.m.