Man pages for allanecology/multiFunBetadivLuiGDM
Testing effects of multitrophic beta-diversity and land-use intensity (LUI) on ecosystem multifunctionality
| add_back_missing_plots_species_combinations | Add back missing plots x species combinations |
| BEplotZeros | Change Exploratories plot names without zeros to plot names... |
| BetaDivMultifun | BetaDivMultifun |
| beta.pair.abund_zerospecies | beta.pair.abund handle plots without species |
| beta.pair_zerospecies | beta.pair handle plots without species |
| calc_avg_number_of_biotic_abiotic_drivers_of_single_functions | calculate average number of biotic/abiotic/LUI drivers of... |
| calc_presenceabsence | Convert To Presence-Absence |
| colComb | combine columns |
| CompareToReferenceDataset | Test if column is identical with reference dataset |
| create_abio_barplot | create plot abio |
| create_bio_aboveground_barplot | create plot "p" |
| create_bio_belowground_barplot | create plot bio belowground |
| create_gdm_lineplot | create lineplots |
| create_gdm_lineplot_predictorwise_thresholds | create lineplots of all thresholds |
| create_overview_above_below_abiotic_barplot | DEPRECATED create plot Overview : Aboveground - belowground -... |
| create_overview_barplot | Create Overview Barplot |
| create_overviewbar_restab | Create restab for overview bars |
| create_overview_turnover_nestedness_abiotic_barplot | DEPRECATED create plot Overview : turnover - newtedness -... |
| create_restab | Create the table for plotting |
| create_restab0 | create restab 0 |
| create_single_funs_overviewbar_plot | Create the overview plots for single functions models |
| create_single_funs_overviewbars | Create the overview table for multiple models |
| find_and_supplement_missing_plots | Fill number of plots to 150 |
| get_nice_legend | get legends of plots |
| get_random_number_from_truncated_normal_dist | Get random vector from a truncated normal distribution |
| hedo | show head in two directions |
| isplineExtract.edit | isplineExtract.edit |
| ksource | Sourcing a Rmarkdown document |
| loadAndCleanEcosystemFunctions | load and clean functions dataset |
| loadAndCleanLUI | load and clean LUI dataset |
| maxx | Calculate the mean of top X values |
| model_names | GDM model names |
| multidiv | Calculate multifunctionality |
| panel.cor | Panel cor |
| panel.hist | Panel hist |
| paste_gdm_input_path_together | create GDM input file path |
| perform_missforest_imputations | Multiple imputation loop |
| plot_diagn_gdm | Plot diagnistic Plot from gdm package |
| plotUncertainty_getsd | plotUncertainty_getsd : Get GDM sd at max height DEPRECATED |
| plotUncertainty_slim | plotUncertainty_slim : Get spline uncertainty |
| prepare_for_betapair | Prepare for beta.part |
| scale01 | Normalisation / scale to 0 and 1 |
| setNonpublicVariables | set nonpublic variables |
