Man pages for allanecology/multiFunBetadivLuiGDM
Testing effects of multitrophic beta-diversity and land-use intensity (LUI) on ecosystem multifunctionality

add_back_missing_plots_species_combinationsAdd back missing plots x species combinations
BEplotZerosChange Exploratories plot names without zeros to plot names...
BetaDivMultifunBetaDivMultifun
beta.pair.abund_zerospeciesbeta.pair.abund handle plots without species
beta.pair_zerospeciesbeta.pair handle plots without species
calc_avg_number_of_biotic_abiotic_drivers_of_single_functionscalculate average number of biotic/abiotic/LUI drivers of...
calc_presenceabsenceConvert To Presence-Absence
colCombcombine columns
CompareToReferenceDatasetTest if column is identical with reference dataset
create_abio_barplotcreate plot abio
create_bio_aboveground_barplotcreate plot "p"
create_bio_belowground_barplotcreate plot bio belowground
create_gdm_lineplotcreate lineplots
create_gdm_lineplot_predictorwise_thresholdscreate lineplots of all thresholds
create_overview_above_below_abiotic_barplotDEPRECATED create plot Overview : Aboveground - belowground -...
create_overview_barplotCreate Overview Barplot
create_overviewbar_restabCreate restab for overview bars
create_overview_turnover_nestedness_abiotic_barplotDEPRECATED create plot Overview : turnover - newtedness -...
create_restabCreate the table for plotting
create_restab0create restab 0
create_single_funs_overviewbar_plotCreate the overview plots for single functions models
create_single_funs_overviewbarsCreate the overview table for multiple models
find_and_supplement_missing_plotsFill number of plots to 150
get_nice_legendget legends of plots
get_random_number_from_truncated_normal_distGet random vector from a truncated normal distribution
hedoshow head in two directions
isplineExtract.editisplineExtract.edit
ksourceSourcing a Rmarkdown document
loadAndCleanEcosystemFunctionsload and clean functions dataset
loadAndCleanLUIload and clean LUI dataset
maxxCalculate the mean of top X values
model_namesGDM model names
multidivCalculate multifunctionality
panel.corPanel cor
panel.histPanel hist
paste_gdm_input_path_togethercreate GDM input file path
perform_missforest_imputationsMultiple imputation loop
plot_diagn_gdmPlot diagnistic Plot from gdm package
plotUncertainty_getsdplotUncertainty_getsd : Get GDM sd at max height DEPRECATED
plotUncertainty_slimplotUncertainty_slim : Get spline uncertainty
prepare_for_betapairPrepare for beta.part
scale01Normalisation / scale to 0 and 1
setNonpublicVariablesset nonpublic variables
allanecology/multiFunBetadivLuiGDM documentation built on Nov. 12, 2023, 6:16 a.m.