clean_pollen: Function to clean pollen datasets from Neotoma

In allisonstegner/NeotomaRfns:

Description

This function compiles pollen using Neotoma-defined pollen lists or selects user-specified ecological groups And optionally limits to abundant taxa Then calculates pollen percent or returns counts

Usage

clean_pollen(pol_ds, type, topN = NULL, eco.group, list.name = NULL)

Arguments

pol_ds	a single site from a Neotoma download object
type	If type="pct", return is proportion. Else, counts are returned.
topN	integer; allows user to limit result to the topN most abundant taxa. Default (NULL) is to return all taxa.
eco.group	Neotoma ecological group codes. e.g., UPHE=upland herbs
list.name	Neotoma pre-defined pollen list name

Value

A matrix of pollen counts or proportions

Author(s)

M. Allison Stegner

allisonstegner/NeotomaRfns documentation built on Nov. 17, 2020, 3:15 a.m.