In almeidasilvaf/GEAtlas: Building Expression Atlas from RNA-Seq data

knitr::opts_chunk$set(
    collapse = TRUE,
    comment = "#>",
    fig.path = "man/figures/README-",
    out.width = "100%"
)

bears

The goal of bears is to download RNA-seq data from NCBI SRA, preprocess them, map to the reference genome, and quantify the expression at the gene level. The goal of bears is to make RNA-seq data analysis pipelines reproducible, with a framework built on state-of-the art methods and software tools.

Installation instructions

Get the latest stable R release from CRAN. Then install bears from GitHub with:

if (!requireNamespace("remotes", quietly = TRUE)) {
    install.packages("remotes")
}

remotes::install_github("almeidasilvaf/bears")

Code of Conduct

Please note that the bears project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

almeidasilvaf/GEAtlas documentation built on April 14, 2023, 6:58 p.m.