get_url_ena: Get URL for each file in the ENA's FTP repository
In almeidasilvaf/bears: Building Expression Atlas from RNA-Seq data
View source: R/01_download_data.R
get_url_ena R Documentation
Get URL for each file in the ENA's FTP repository
Description
Get URL for each file in the ENA's FTP repository
Usage
get_url_ena(sample_info = NULL, link_from = "api")
Arguments
sample_info
Data frame of sample metadata created with the
function create_sample_info.
link_from
Method to extract the URL to each FASTQ file in the ENA's
ftp repository. One of 'api' or 'iterative'. Default: 'api'.
Value
A character vector with the URL for each accession.
Examples
data(sample_info)
get_url_ena(sample_info)
almeidasilvaf/bears documentation built on April 14, 2023, 7:06 p.m.
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View source: R/01_download_data.R
| get_url_ena | R Documentation |
Get URL for each file in the ENA's FTP repository
Description
Get URL for each file in the ENA's FTP repository
Usage
get_url_ena(sample_info = NULL, link_from = "api")
Arguments
sample_info |
Data frame of sample metadata created with the
function |
link_from |
Method to extract the URL to each FASTQ file in the ENA's ftp repository. One of 'api' or 'iterative'. Default: 'api'. |
Value
A character vector with the URL for each accession.
Examples
data(sample_info)
get_url_ena(sample_info)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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